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Domain assignment for gi|385804831|ref|YP_005841231.1| from Haloquadratum walsbyi C23

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|385804831|ref|YP_005841231.1|
Domain Number 1 Region: 299-615
Classification Level Classification E-value
Superfamily beta and beta-prime subunits of DNA dependent RNA-polymerase 1.86e-73
Family RNA-polymerase beta-prime 0.0000131
Further Details:      
 
Domain Number 2 Region: 89-212,263-302
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 1.65e-27
Family Intein (protein splicing domain) 0.02
Further Details:      
 
Domain Number 3 Region: 34-102
Classification Level Classification E-value
Superfamily beta and beta-prime subunits of DNA dependent RNA-polymerase 0.0000000000778
Family RNA-polymerase beta-prime 0.0089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|385804831|ref|YP_005841231.1|
Sequence length 637
Comment DNA-directed RNA polymerase subunit A'' (subunit C) [Haloquadratum walsbyi C23]
Sequence
MTETITDASEYEHITDDIAAIVDDYNLPESLQHRIYETIEERGEVPTEKVDDIAQAIASR
YEDSRVDAHDPVGTVSAQSIGEPGTQMSIEADESIVIRRDGETELTEIGSFVDTILTADN
QETRITDGHEIALAPNGLEVPSLDTDEQIRWKHIEAVSRHASPDEILLIELESGRSIRAT
KAHSFVTRRDGDVLPVAGETLVMGDVLPTVGSYDHASGSISVPLQSQSVAADGGTVEPNT
NITANAERDSTSITSAGIIGSATWERISSIETVAPEYEYVYDLSVSGLETFTTGEGVVTH
NTMNTFHYAGVAEIDVTQGLPRLIELVDARKTPDTPTMTVYLEEEYANERPRAHEVVWQM
EATKILALGDISTNVADMLVQVDLNAETLNERWPTIGDADLIAEEVQDIIENNLGVSTRR
EKMLIEFGPSEPSYRRLLQLVEELRDIVFKGLEDISRVVIRKEDNERTNGEEFVLYTEGS
ALGDVLPIEGVDASRTTSNNIHEVHRNLGIEAARESIINETMETLREQGLDDVNVRHLML
VADIMTNRGEIESIGRHGISGSKDSVLARAAFEVTVNHLLDAAVHGEEDDLEGVIENVIV
GKPVAIGTGDVDLRMGSIDADSGRSANSGGPPELSDD
Download sequence
Identical sequences G0LF89
gi|385804831|ref|YP_005841231.1| WP_014556972.1.96088

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