SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for ORGLA05G0198900.1 from Oryza glaberrima

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ORGLA05G0198900.1
Domain Number 1 Region: 122-271
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.15e-42
Family B3 DNA binding domain 0.0049
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) ORGLA05G0198900.1
Sequence length 687
Comment pep:novel scaffold:1.0:Oglab05_0141:545053:550555:1 gene:ORGLA05G0198900 transcript:ORGLA05G0198900.1
Sequence
MGIDLNTVEEEAEEGAAAAVCGELWHACAGPGVALXXXXXXXXXXXXXXXXXXXXXXXVP
PAGAAAVPPHVACRVVGVELRADAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEG
CDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHG
TQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNE
ALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIG
MRFRVCYESEDANERSAGLISGISEVDPIRWPGSRWKCLLVRWDDSTDSSHQNRVSPWEI
ERVGGSVSVTHSLSSGSKRTKLHFPQGSLDTPFLNGNGHPDSMGTENFHRVLQGQEFRGS
RSHGVVCSESPGVPNFQSPDNRRFSADMRGYMMPASGPPQRNTEFTYQPIGFSESLGFPE
VLQGQEMSQVVPLFRGATFGARTQNDRVVSANSVHRSAAQSGLLASTLGHPISQFTLSSS
KVSSPSSVLMFNQATAPNHETVGGTNNKGMHVSQFASQEMLSETVTWPGTQRQTPSEITS
NQFALARIPAPPSGAESGLPKRDAGRSSCRLFGFSLTGNMLGEDGEGLDDGAIEAGCENP
PVLELFGHSHSTPGALHALCAAAPLGM
Download sequence
Identical sequences I1PX91
ORGLA05G0198900.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]