SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for PH01000015G1290 from Phyllostachys heterocyclavar. pubescens

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  PH01000015G1290
Domain Number 1 Region: 177-280
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.96e-30
Family B3 DNA binding domain 0.0000114
Further Details:      
 
Domain Number 2 Region: 65-121
Classification Level Classification E-value
Superfamily DNA-binding domain 2.22e-16
Family GCC-box binding domain 0.0008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) PH01000015G1290
Sequence length 357
Comment PH_genemodel_v1 PH01000015..825443..826795 . + . ID=PH01000015G1290;Name=B3 DNA binding domain containing protein, expressed
Sequence
MGVESLSSTAEYSSHSSGASTATTESSAAQLQPTAPTLPVANAVSPADDEVVTSRPASAA
QQPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPEEEAAARSYDVAALRFRGRDAATNF
PSAAASAAELTFLAAHSKVEIVDMLRKHTYADELRQGLLRGRGMGARAQPTPSWARAPLF
EKAVTPSDVGKLNRLVVPKQHAEKHFPLKRTPETATGKGVLLNFEDGEGKVWRFRYSYWN
SSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKQLFIDCKKNKTTCTDGGDTSPVE
KGKEARVVMLFGVDIAGDGCQKRGRAVEMALEQGQEFFKRQCVGAHQRSPALGACVL
Download sequence
Identical sequences PH01000015G1290

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]