SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000004882 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000004882
Domain Number 1 Region: 78-191
Classification Level Classification E-value
Superfamily DNA-binding domain 1.21e-32
Family Methyl-CpG-binding domain, MBD 0.00046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000004882   Gene: ENSSSCG00000004528   Transcript: ENSSSCT00000005002
Sequence length 360
Comment pep:known_by_projection chromosome:Sscrofa10.2:1:113952131:114064057:-1 gene:ENSSSCG00000004528 transcript:ENSSSCT00000005002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
RPEGAGAGRARPGAERVGRGACPRGGGXRGRGRGRGRGRGGRGRPPSGGSGLGGDGGGGG
CGSSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSA
GKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQ
NKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKVKSDPQRMNEQPRQLFWEKRLQGLSA
SDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSAAVEKNPAVWL
NTSQPLCKAFIVTDEDIRRKQEERVQQVRKKLEEALMADILSRAADTEEMDIEMDSGDEA
Download sequence
Identical sequences ENSSSCP00000004882 ENSSSCP00000004882

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]