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  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000017353

Domain assignment for ENSSSCP00000017353 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000017353
Domain Number 1 Region: 578-651
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 2.63e-19
Family Eukaryotic type KH-domain (KH-domain type I) 0.0011
Further Details:      
 
Domain Number 2 Region: 645-721
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.26e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.00001
Further Details:      
 
Domain Number 3 Region: 146-225
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.9e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.0000134
Further Details:      
 
Domain Number 4 Region: 436-506
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 3.51e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.0000233
Further Details:      
 
Domain Number 5 Region: 344-431
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 4.68e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.00000452
Further Details:      
 
Domain Number 6 Region: 726-830
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 6.71e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.002
Further Details:      
 
Domain Number 7 Region: 971-1047
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 7.74e-17
Family Eukaryotic type KH-domain (KH-domain type I) 0.0000113
Further Details:      
 
Domain Number 8 Region: 501-576
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000000019
Family Eukaryotic type KH-domain (KH-domain type I) 0.0015
Further Details:      
 
Domain Number 9 Region: 865-917,947-970
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000000019
Family Eukaryotic type KH-domain (KH-domain type I) 0.0019
Further Details:      
 
Domain Number 10 Region: 289-364
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000000107
Family Eukaryotic type KH-domain (KH-domain type I) 0.0022
Further Details:      
 
Domain Number 11 Region: 1049-1092
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.00000000234
Family Eukaryotic type KH-domain (KH-domain type I) 0.00011
Further Details:      
 
Domain Number 12 Region: 222-293
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000555
Family Eukaryotic type KH-domain (KH-domain type I) 0.0056
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000017353
Domain Number - Region: 99-148
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.041
Family Eukaryotic type KH-domain (KH-domain type I) 0.0088
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000017353   Gene: ENSSSCG00000016379   Transcript: ENSSSCT00000017834
Sequence length 1095
Comment pep:known_by_projection chromosome:Sscrofa10.2:15:155072239:155097235:-1 gene:ENSSSCG00000016379 transcript:ENSSSCT00000017834 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MSSVAVLTQESFAEHRSGLIPQQIRVATLNSEEESDPPTYKDAFPPLPEKAACLENPQEP
AGAWSNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLA
KDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKT
ATKIQIPRPDDASNQIRITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPSSRGP
HRLVSEIMQETGTRINIPPPSVNRTEIVFTAKKEQLAQAVARIRKIYEEKKKKTTTIAVE
VKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSASETVILRGEPEKLGQALTEVYAKA
NSFTVSSVSAPSWLHRFIIGKKGQNLAKITQQMPKVHVEFTEGEDRITLEGPTEDVSAAQ
EQIEAMVKDLVSRMDYVEISIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSERSSLI
RIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVI
INFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGG
ANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAARSRILSIQKDLANIAEVEVAIP
ARLHNALIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKARKQLLHLAE
EKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITIIGRED
AVREAQRELEALIQNLDNVVEDFMLVDPRHHRHFVIRRGQVLREIAEEYGGVMVSFPRSG
TQSDRVTLKGAKDCVEAAKKRIQEIIEDLEAQVTIECAIPQKFHRSVMGPKGSRIQQITR
DHNVQIKFPDREENPAHGTEPAVQENGDDPGEGRDGKEAEPGSPRRCDIITISGRKEKCE
AAKEALEALVPVTIEVEVPLDLHRYIIGQKGSGIRRMMDEFEVNIHVPAPELQSGVIAIT
GLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLE
HDVNIQFPDKDDGSQ
Download sequence
Identical sequences ENSSSCP00000017353 ENSSSCP00000017353

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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