SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|435849237|ref|YP_007311487.1| from Natronococcus occultus SP4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|435849237|ref|YP_007311487.1|
Domain Number 1 Region: 952-1074,1422-1455
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 2.35e-22
Family Hedgehog C-terminal (Hog) autoprocessing domain 0.065
Further Details:      
 
Domain Number 2 Region: 1285-1404
Classification Level Classification E-value
Superfamily Homing endonucleases 8.08e-16
Family Intein endonuclease 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|435849237|ref|YP_007311487.1|
Sequence length 1707
Comment DNA polymerase type II, large subunit [Natronococcus occultus SP4]
Sequence
MREEDERYFRRLESQLDTAFDVAERAKERGADPEPEVEIPVAKDMADRVENILGIDGVAE
RVRELEGEMSREEAALELAEDFAEGRVGDYETKAGKVEGAVRTAVALLTEGVVAAPIEGI
DKVELLENDDGTEFVNVYYAGPIRSAGGTAQALSVLVADYTRALVGIEQYDARQEEVERY
AEEIGLYDKETGLQYTPKDKETKFIATHLPIMLDGEATGDEEVSGFRDLERVDTNNARGG
MCLVLAEGIALKAPKIQRYTSALDEIDWPWLQDLIDGNYEADAEDGPDDAETDEDAEDEA
ESLEDEDALDESDDPAGPPRVGTSKKFLRDLIAGRPVFSHPCSEGGFRLRYGRARNHGFA
TAGVHPAAMHLVDDFLATGTQIKTERPGKAAGVVPVDTIAGPTVKLANGDVRRIDDPEEA
KEIRNGVEEILDLGEYLVNYGEFVENNHPLAPASYTPEWWIQDLAAAGADVQALEDDPRI
DLTDPDADRVLEWATEYDAPLHPAYTYLWHDLSVENFCTLADAVADGRVTNAGETLVLEH
TDTVREALETIVIEHRQREDRLEVDDWRPLARSLGCEIRRASADGAVLEEPTVELERTWS
DDDLSERARTWGHEDEPDGANAIEAVAEVAPFDVRERAPTRVGNRMGRPEKSERRDLSPP
VHTLFPIGEAGGPQRNVADAAKHAETMSDTPGVVELQIGRQRCENCGTETFENRCPDCNE
RTTPDYRCPDCDSQIEPDEAGRVECGRCEVEATCVETREVDLNAQYRDALGSVGERENAF
EILKGVKGLTSTTKVPEPIEKGVLRAKHDVSAFKDGTVRYDMTDLPVTAVRASELDVDVG
QLQALGYEEDIHGEPLVHEDQLVELKVQDVVLSDGAAEHMIQTAAFIDDLLEQYYGLEPF
YELEDRQDLVGELVFGMAPHTSAATVGRVIGFTSAAVGYAHPYFHAAKRRNCFHPRTKVW
YRDEADEWHHERIETLVEQRLDDPERDDFGTLVQELDGELAVPSIDDTGTLTEQPIDAVS
KHPAPDHLVRLETRSGREITLTPDHEVHVSENGELRSKRAGNLTTEDYAVVPEDLDIVEG
TDDPRVFDLLEEFLETDAVDSSRLMIKGLEKDRLYDLFEDRLGEEWDGQFYPLTSTAEQF
GLSKKTFSNYLYRESFPAALLLDLFDSREALLEFVPDDVSLGMRRDRTEIDRFVELDERV
GTLLGYYAAEGFAREQETPKGRIHQTTICGTETEAREFYVEVLREAFGVEPYRENEAKVT
VSGRLLRVFFESVLEAGIFAETKRVPQPIFDASDEVVAAYLRGYFSGDGGVDSNGLLVSA
TTVSRELKEDVLALLSRLGICGRVTVTDPVPPSEKFPELYAADDSSMTATSYVLEISSED
ATRFAETVGFHLTRKDDRLRSQIDAITPRGRRVFDGGAESALVEPISTVEYVESTVDSVY
CLTVAETHSLVANNMSQKQCDGDEDCVMLLLDGLLNFSKSFLPDKRGGKMDAPLVMSSRI
DPSEIDDEAHNMDIVSQYPREFYLATLEQADPDAVDIQVGEDTLGTDGEYTGFEHTHDVT
DIAMGPDLSAYKTLGSMMEKMDAQLELSRKLRAVDETDVAERVIEYHFLPDLIGNLRAFS
RQETRCLDCGEKFRRMPLTGDCRECGGRVNLTVHQGSVNKYMQTAIQVADEYDCRDYTKQ
RLEVLEKSLESIFEDDKNKQSGIEDFM
Download sequence
Identical sequences L0K315
WP_015323129.1.9138 gi|435849237|ref|YP_007311487.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]