SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Tc04_g016560 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Tc04_g016560
Domain Number 1 Region: 265-344
Classification Level Classification E-value
Superfamily RING/U-box 2.43e-28
Family U-box 0.00028
Further Details:      
 
Domain Number 2 Region: 370-650
Classification Level Classification E-value
Superfamily ARM repeat 2.73e-25
Family Armadillo repeat 0.025
Further Details:      
 
Weak hits

Sequence:  Tc04_g016560
Domain Number - Region: 176-256
Classification Level Classification E-value
Superfamily Bacterial hemolysins 0.00628
Family Hemolysin E (HlyE, ClyA, SheA) 0.079
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Tc04_g016560
Sequence length 681
Comment U-box domain-containing protein 16
Sequence
MAVSPQVFPPRKRRPSAGSFLSPKLTDLNLVQSLLSLSQEISSLKPLQFLLKRNSLSTIN
KAKLLAILFEEPLRNPVSNFFSPSTILCFEEMYIVLQRIKTLMEDCSNGSKMWLLLQIKP
LANSFHELTLELSTLLDIFPVKEVDLSRDVEELVVLLRKQCTQSKPLIDPRDDFLMREVI
AMLDQIKKEIVPDHSRLKQIVENLGLRDNSSCREEIESLQEEIQNQMDEKSKADIVSVIG
LVRYAKCVLYGSSTTQKSDHRRRKSMSDISIPADFRCPISLELMRDPVVVASGQTYDRES
INQWIESGHNTCPKTGQTLAHISLIPNRSLRNLIAMWCREQRIPFETAGSNEKVNGVKAT
KAALEATKMTVSFLVNKLSVSQSMEAANGVIYELRALAKTDSDSRACIAEAGAIPILVRY
LGSAVGSDHPCLQVNAVTTILNLSILEANKTRIMETDGALNGVIEVLRSGASWEAKGNAA
ATIFSLSGVHAYRKRLGRKTRVIKGLMDLAKDGPTSSKRDALVAILNLAGDRETVGRLVE
GGVIEVVSGVINELPEEAVTILEAVVKRGGLQAIAAAYSAIRKLGVILREGSDTARESAA
AALVTICRKGGSEVVAELAAIPGIERIIWEVMGTGTVRARRKAATLLRILRRWAAGLDIN
AVDSSSMMTTTVSTSRIVLPA
Download sequence
Identical sequences XP_007033563.2.67643 Tc04_g016560

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]