SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for ENSSHAP00000000664 from Sarcophilus harrisii 76_7.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSHAP00000000664
Domain Number 1 Region: 8-159
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 7.85e-28
Family Retrovirus capsid protein, N-terminal core domain 0.02
Further Details:      
 
Domain Number 2 Region: 168-245
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.47e-17
Family Retrovirus capsid protein C-terminal domain 0.0025
Further Details:      
 
Domain Number 3 Region: 310-350
Classification Level Classification E-value
Superfamily Acid proteases 0.000000000116
Family Retroviral protease (retropepsin) 0.008
Further Details:      
 
Domain Number 4 Region: 248-287
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000143
Family Retrovirus zinc finger-like domains 0.0039
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSHAP00000000664   Gene: ENSSHAG00000000593   Transcript: ENSSHAT00000000674
Sequence length 352
Comment pep:novel scaffold:DEVIL7.0:GL848255.1:1951:3505:-1 gene:ENSSHAG00000000593 transcript:ENSSHAT00000000674 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
KKALIQAKNEGEDRSDFINAYPVIEKLDSSGQKERKYTPFNLEKIKDLKKGCILYGATSS
YGKLLLDNLSYEILTLNDWKSIAKTCLEPRQNLLWLLEFHELCRIQAQRNRQTGAIGQVT
FDQLAGEGQYGENSEQIYYPIAVYEQISKAAIKAWCSLPGQKDGCKAFTKIEQGPNDPFA
DFVGCLQTAVIRTIGDNTATEIMTRHLAKENANEVCKRIIWGLDKDAPLEETIRHWATVG
TNAYYAQTMTNMQRQGPSWQGTSRETRRCFQCGKVGHLRVHCRYGDRPKGNQRGKEGIAV
SLWIPCLQQSPGIFWTAAVTDDRPMLTIYVNGIPLKGLVDTGADRTVIRGAS
Download sequence
Identical sequences G3VBW0
ENSSHAP00000000664 ENSSHAP00000000664

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