SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|302879572|ref|YP_003848136.1| from Gallionella capsiferriformans ES-2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|302879572|ref|YP_003848136.1|
Domain Number 1 Region: 835-1005
Classification Level Classification E-value
Superfamily Nucleotide cyclase 2.51e-43
Family GGDEF domain 0.00017
Further Details:      
 
Domain Number 2 Region: 53-271
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 6.06e-41
Family Phosphate binding protein-like 0.00053
Further Details:      
 
Domain Number 3 Region: 689-812
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 1.93e-27
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.013
Further Details:      
 
Domain Number 4 Region: 558-691
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 9.77e-21
Family Heme-binding PAS domain 0.032
Further Details:      
 
Domain Number 5 Region: 309-436
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 9.77e-18
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.045
Further Details:      
 
Domain Number 6 Region: 468-569
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 5.03e-16
Family Flavin-binding PAS domain 0.066
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|302879572|ref|YP_003848136.1|
Sequence length 1009
Comment PAS/PAC sensor-containing diguanylate cyclase [Gallionella capsiferriformans ES-2]
Sequence
MHTTGTNVRKVLTYFVMFFHLLFLVNTVAHASSETQDITSQTPTQVTQLHKATLIVGSEQ
DYPPFATGMTDATAGGFTVDLWKAVADEARLNYTIRVLPFHQLLQEFKDGKIDVLINLAQ
SEQRRHFADFTVPHVIMHGAIFVRRGKNSIHTEDDLHGKSIIVLRADLGHDYAVSKGWMN
NLVLVDSPVEGFKLLASGKHDAMLLAKLTGIQTLNSLGLDTVQPLKIKIGFSQKFSFAVA
KGQSDLLGKINEGLALTKSNRTYDALYEKWFSAYEERAISRSDILLYLTPVFAFFLLMAI
YVYYRRKVEREMAGAALAEAKKLLATIIDTAPIRIFWKDKHLKYLGCNAIFSKDAGAESP
NEVIGKDDYQMVWRAQAAEYRQDDLAVIASGQTKLFYEEQQTTPAGEVIWLHTSKVPLKN
SSGEIIGILGVYEDITEKKHTEEQMQFLLLEQKAMLENDLVGIVRVQDRVITWANPSFEH
MLGYGKGELNGKPTRICYINDKAYHDLGEAAYPALKSGKVYRTQLEHACKDGRVIWVDIS
GTTLNATTGESLWAFLDITERKQVETALQNSNQQLNLLLDSMAEGTYGVDTNENCIFVNH
SFLKILGYQSQDEVVGKNIHELIHHSHADGTPYPASECRIYASNLRNENLHCDDEVFWHR
LGVPIPVEYWSRPIINDGVLIGCIVTFIDISERKEAEEKLRYSEQRFHDVSDAAGEYLWE
LDANMIYTYVSTRAIDVKGYTPEELLGKSPMAFMPEEDIENVGNIINRAITSRGPFKLEH
RDITKSGALVWEEVNGLPIYDKNGEVIGLRGTGLNISERKEMEERVHQLAFYDPLTSLPN
RRLLNDRLSQAMSAGERSGLYGALMFLDLDNFKPLNDTHGHGVGDLLLIEAASRLKKCVR
GMDTVARFGGDEFVVMLSELDAGKSDATVQARLVAEKILAALSEPYVLKISTSDEFSSVE
HHCTASIGVTVFLNHVTRQDDILKQADDAMYVAKGAGRNSIRFHEEFKS
Download sequence
Identical sequences D9SJI4
gi|302879572|ref|YP_003848136.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]