SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|297616733|ref|YP_003701892.1| from Syntrophothermus lipocalidus DSM 12680

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|297616733|ref|YP_003701892.1|
Domain Number 1 Region: 180-559
Classification Level Classification E-value
Superfamily Fe-only hydrogenase 7.06e-133
Family Fe-only hydrogenase 0.0000000394
Further Details:      
 
Domain Number 2 Region: 74-204
Classification Level Classification E-value
Superfamily 4Fe-4S ferredoxins 5.44e-29
Family Ferredoxin domains from multidomain proteins 0.0074
Further Details:      
 
Domain Number 3 Region: 1-72
Classification Level Classification E-value
Superfamily 2Fe-2S ferredoxin-like 0.00000000000000742
Family 2Fe-2S ferredoxin domains from multidomain proteins 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|297616733|ref|YP_003701892.1|
Sequence length 563
Comment hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Sequence
MVSVVINGSKVDVPEDFTVMQAAAQAGFMIPSLCSHPDLKVKENCNVCVVEVNGELKNAC
AEKVSPGMEVKTFTPRVIEAKRENLKKILKVHPQDCLQCARNQNCELQALTATLTVRSFE
HKPLQLTKDTSTPSIVRDPSKCTLCGRCVEVCNDIQTVGALEIKDGVVQTVDGKPLIETK
CVMCGQCALACPVGAITEKEEIDRFLEAIADPEKIVVTQIAPAVRVAVAEEVGMETGSLD
MLTFVAGLRQLGFDYVFHTNFTADLTIMEEGNELLKRLKEGGTLPMLTSCSPGWINFIET
FYPEQLPHLSTCKSPQQMFGALVKTYWADKMGIDPAKIFSVSIMPCTAKKYEATRPEMRD
SGYQDVDLVLTTREVGRLFRMCGVGFDKLQPSNFDSLMGAYTGAAVIFGASGGVMEAALR
TVYEVVTGKTLEDVNFTAVRGFEGMKEAEVDLDGTKVKVAVANSLGCARKIMEEIKAGTS
PYHFIEIMCCPGGCIGGGGQPIPSTVAKRVERIKGIYIEDEGLPLRKSHENPEVKLLYED
FLHEPLGHKSHELLHTHYTPKNK
Download sequence
Identical sequences D7CKU2
gi|297616733|ref|YP_003701892.1| WP_013174729.1.24510

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]