SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|302038615|ref|YP_003798937.1| from Candidatus Nitrospira defluvii

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|302038615|ref|YP_003798937.1|
Domain Number 1 Region: 7-36,64-491
Classification Level Classification E-value
Superfamily Outer membrane efflux proteins (OEP) 2.88e-112
Family Outer membrane efflux proteins (OEP) 0.000000447
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|302038615|ref|YP_003798937.1|
Sequence length 506
Comment efflux transporter outer membrane factor lipoprotein [Candidatus Nitrospira defluvii]
Sequence
MKRVTSRRQLAISTVLVMLSLSASGCLQGPNYHRPPVDTPADWTRMASGPLAAGATETMP
EADWWQAFHNQELTQFVERALAQNHDVRRAVSRVLEGRASVTTAGAGLYPQLNVQGSYSN
IVVSKNTLAGLGLATGQQPGPQVFAKPGSSFDLWNGAADLRWELDVWGRIRRGMEAASAD
AQAIEQDARAIALTLVGDVGQSYFRIRELDEQIEIAQRALTLRRDSLDIITKRASVGLAS
DLDVKRTEVLVAESAGQIPDLTRLRAVELHRLEVLTGSAPGSVVLAPTSLRKVIVQPEIP
VGLPSQLLERRPDILQAEASLVAANARIGQARAYFFPTLSITGQGGLQSAEFVNWFSGNS
ANFSIGPSVTLPIFLGGTNVARLEAAESRYQQMLEGYQQTILLAFREVADLLVSIQSRSE
QLARQREQATAATAAVGLAEVRYRKGLVNYLDVLDAQRTMLAAETQLAQTERARLTDMVG
LYKALGGGWQTPGDNPLAMPTGSAAH
Download sequence
Identical sequences D8PIC5
WP_013249832.1.3676 gi|302038615|ref|YP_003798937.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]