SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|94986129|ref|YP_605493.1| from Deinococcus geothermalis DSM 11300

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|94986129|ref|YP_605493.1|
Domain Number 1 Region: 33-406
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 5.98e-81
Family L-arabinose binding protein-like 0.0087
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|94986129|ref|YP_605493.1|
Sequence length 407
Comment branched-chain amino acid ABC transporter substrate-binding protein LivK [Deinococcus geothermalis DSM 11300]
Sequence
MQKQTLTALVSTAALAAMTVALAQSLKLSDNVVRIGVLTDLSGVYSELSGQGSVKAAQMA
AADFMAMNPSFRGKVQVIGVDHQNKADVASNKAAEMIDRQKVDVLMDLPTSSAALAASEV
ARQKKVPVMVVTGGTTALTNEKCNKYTFHYAYDNYMLANGTGTAVTKRGGNSWYIIYPNY
AFGQDLNRQMTAAIQENGGKLVAPSDATPFPNTDFSSYLLKAQGLKPKVFGTMQAGADLV
NVVKQYNEFGLRQQGIGLGIGLLFETDVAALGQDAFAGALATVPWYWNMDQRARDWAAKF
EKAFGKKPTWAQAGVYSATMTYLQAVARAKSDDGDAVVKALEGHRFSDFFARNAYVRPQD
HRVMLDVYTVQVKPKAQAKENGDYFNKVATIPAARAFMPLSESKCRM
Download sequence
Identical sequences Q1IWR0
319795.Dgeo_2030 WP_011531150.1.71355 gi|94986129|ref|YP_605493.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]