SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|339482344|ref|YP_004694130.1| from Nitrosomonas sp. Is79A3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|339482344|ref|YP_004694130.1|
Domain Number 1 Region: 244-527
Classification Level Classification E-value
Superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain 2.88e-75
Family Methyl-accepting chemotaxis protein (MCP) signaling domain 0.000000115
Further Details:      
 
Domain Number 2 Region: 20-114
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 1.92e-26
Family Flavin-binding PAS domain 0.021
Further Details:      
 
Weak hits

Sequence:  gi|339482344|ref|YP_004694130.1|
Domain Number - Region: 169-216
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 0.0209
Family Multidrug efflux transporter AcrB transmembrane domain 0.044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|339482344|ref|YP_004694130.1|
Sequence length 577
Comment methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Nitrosomonas sp. Is79A3]
Sequence
MRVNLPVTNTEYPIEDDTLIVSTTDTKGRITYVNPTFIEVSGFCEEELIGKAHNIVRHPD
VPPEAFEDLWNTLKQGLPWTGLVKNRRKNGDFYWITANATPLLENGKITGYLSVRTKAPR
AAIEQVAPIYRKILDGKAPNLRIEKGQVVRTDLIGKFSALFKMTLSKRIALFMAIPAVFL
LTAGSIGWWSLTQAQIPASLSSMIAGITLTGVAVMFYLAFSMVKNTLTPLNQAIDVANIL
ASGDLTHKFSINRSDEFGQLLKALTQMGVNLRATVLDVQKNALSVSQATSEIASGNLDLS
QRTEEQASSLEETASSMEELTAAVRQNTDSSISANQLALTASDITAKGGIMMKEVVTTMS
SISESSKKIADIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAT
AAKEIKTLIDDSVQKVDEGTALVNRAGKTMDEIVGSIKHVTEIMSDITSASKEQSTGIEQ
VNQAVTQMDEVTQQNAALVEQAAAAAASLEQQAHELVGAISIFNVAQNTAKHPATVVQLT
DKRTGFTERSNLHNGNSHLKKRSKIAVGDNSNQWSEN
Download sequence
Identical sequences F8GLI5
gi|339482344|ref|YP_004694130.1| WP_013965026.1.5279

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]