SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|297622046|ref|YP_003710183.1| from Waddlia chondrophila WSU 86-1044

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|297622046|ref|YP_003710183.1|
Domain Number 1 Region: 66-437
Classification Level Classification E-value
Superfamily S-adenosyl-L-methionine-dependent methyltransferases 1.99e-84
Family (Uracil-5-)-methyltransferase 0.00016
Further Details:      
 
Domain Number 2 Region: 7-65
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000000000343
Family TRAM domain 0.0072
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|297622046|ref|YP_003710183.1|
Sequence length 441
Comment 23S rRNA (uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044]
Sequence
MKIVGDKFDISIRSLGTHGEGVGDLDGFTLFVDGALPGERVFVELTAVKKTYGVGKLLRI
LERSPDRVDPVCPLFGRCGGCQVMHLNYSSQLERKRQRVVDAFERIGKLMDVEVLPCVPS
PLPLKYRNKVQAPIRQKKEGLSIGFYARNSHHLVDVDLCYIHCALGQRVYERSVALLKSS
GISKEKLRHLIIKTAVKTEQALVVIVTGTDQKKSLARLAEEIQRQCPEVKGVIQNVNPHL
HNVVLGKTFEVLSGQGWMEEEILDLRFYVSPASFFQVNPAQAEQLYRQVIDWAELKGGER
VLDAYCGVGTLSLLLARKAGRVVGVECVPQAIADAERNASLNCLANVSFVCAEAEKWIQS
AERMDLVVLNPPRKGCHPEMIKAIGKMRPTRLIYVSCDPATLARDLAMLQESGYKIDGAC
PFDMFPQTAHVETVVKLSTKL
Download sequence
Identical sequences D6YSY2
gi|297622046|ref|YP_003710183.1| WP_013182877.1.19835 WP_013182877.1.67671

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]