SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|147919658|ref|YP_686598.1| from Methanocella arvoryzae MRE50

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|147919658|ref|YP_686598.1|
Domain Number 1 Region: 184-231
Classification Level Classification E-value
Superfamily Cna protein B-type domain 0.0000173
Family Cna protein B-type domain 0.014
Further Details:      
 
Weak hits

Sequence:  gi|147919658|ref|YP_686598.1|
Domain Number - Region: 79-161
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.00186
Family Rhamnogalacturonase B, RhgB, middle domain 0.071
Further Details:      
 
Domain Number - Region: 24-81
Classification Level Classification E-value
Superfamily AttH-like 0.0209
Family AttH-like 0.04
Further Details:      
 
Domain Number - Region: 313-352
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.0706
Family Rhamnogalacturonase B, RhgB, middle domain 0.071
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|147919658|ref|YP_686598.1|
Sequence length 447
Comment hypothetical protein RCIX2146 [Methanocella arvoryzae MRE50]
Sequence
MPGVTVVIQDGECRPIGSVQSASDGSFCYNQVPIESGSGTFRIAAVMDKDGVHIQENTAF
FMVYPLKTTTQDVRFYTYPSSGMGTLYGVITSDDYLIREVAGVVYIDNGMYTIYEGNAGG
RWSFWLPAGNYVVWAETNKNLTTYKSQNYTVTVPTDDYGYLPIYLPLKEQAPYHIQPTVQ
RNIVYGHVTQKNGYPLSGATVELFRYVAGGSELVDSTKTNSTGDYCFYNVNARTVSEKFL
VKISCELGGQLYEQSSAPFEVYYANTIGKKHEYYIPLSLNVASTGNLNVITTPTGARVHI
DDIDTGKLTPCNLSDITVGRHTVTLILDGYYNDTSDVNIEPDKTLLLNRTMQISTGTITI
DAMPADARIYLNDQYIGTGIVNIPRAPAGKYKYKIVRDEYQSETGSFDLIPGREVSKSFD
MVAVPSLSLTYLSYLLNNMIKALASLF
Download sequence
Identical sequences Q0W2X1
gi|147919658|ref|YP_686598.1| 351160.RCIX2146

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]