SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 1umpA from PDB chains (SCOP 1.75)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  1umpA
Domain Number 1 Region: 292-625
Classification Level Classification E-value
Superfamily Terpenoid cyclases/Protein prenyltransferases 1.05e-111
Family Terpene synthases 0.00000000000721
Further Details:      
 
Domain Number 2 Region: 38-302
Classification Level Classification E-value
Superfamily Terpenoid cyclases/Protein prenyltransferases 1.23e-69
Family Terpene synthases 0.000000000116
Further Details:      
 
Domain Number 3 Region: 14-119
Classification Level Classification E-value
Superfamily CATH 3.98e-33
Family CATH 0.025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) SCOP: 1umpA   PDB: 1ump
Sequence length 631
Comment (A:)
Sequence
MAEQLVEAPAYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDR
MEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQ
GGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIV
MSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAA
EIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYG
GWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKP
GGFAFQFDNVYYPDVDDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAY
DVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQK
PDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSY
EDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTG
FPGDFYLGYTMYRHVFPTLALGRYKQAIERR
Download sequence
Identical sequences P33247
521098.Aaci_2443 1umpA WP_012811690.1.29831 gi|258512404|ref|YP_003185838.1| 1gsz_A 1gsz_B 1gsz_C 1h35_A 1h35_B 1h35_C 1h36_A 1h36_B 1h36_C 1h37_A 1h37_B 1h37_C 1h39_A 1h39_B 1h39_C 1h3a_A 1h3a_B 1h3a_C 1h3b_A 1h3b_B 1h3b_C 1h3c_A 1h3c_B 1h3c_C 1o6h_A 1o6h_B 1o6h_C 1o6q_A 1o6q_B 1o6q_C 1o6r_A 1o6r_B 1o6r_C 1o79_A 1o79_B 1o79_C 1sqc_A 1ump_A 1ump_B 1ump_C

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]