SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|313676390|ref|YP_004054386.1| from Marivirga tractuosa DSM 4126

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|313676390|ref|YP_004054386.1|
Domain Number 1 Region: 270-567
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain III 1.26e-80
Family DNA repair protein MutS, domain III 0.00000163
Further Details:      
 
Domain Number 2 Region: 569-805
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.89e-56
Family ABC transporter ATPase domain-like 0.00000118
Further Details:      
 
Domain Number 3 Region: 116-269
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain II 4.97e-40
Family DNA repair protein MutS, domain II 0.00028
Further Details:      
 
Domain Number 4 Region: 5-115
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain I 2.49e-38
Family DNA repair protein MutS, domain I 0.000043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|313676390|ref|YP_004054386.1|
Sequence length 867
Comment DNA mismatch repair protein muts [Marivirga tractuosa DSM 4126]
Sequence
MAKTQEAKETPLMKQYNQIKSKYPGALLLFRVGDFYETFGEDAVKASKVLNIILTKRANG
SASHIELAGFPHHAMDNYLPKLVRAGHRVAICDQLEDPKSVKGIVKRGVTELVTPGVSFD
DNVLETGRNNYLASIHFSKNTLGVAFLDISTGEFMTASGNASYIDKLLQGFQPSEIIYSK
SAREHFSHKFSDDYNVHHLEDWIYAFDFAYEKLTKQFKTNSLKGFGIENLEEGIIAAGAI
LHYLEETEHKKIEHIASISRIEEEKYVWMDKFTIRNLELVYPQQEGGIPLIQILDKTLTP
MGSRQIKKWMVLPVKDKAVIEERLQIVEAFHSNQDLTEQLSASLKSMGDVERLISKVAVG
RVNPRELNQLKKALGLMVPLKKALEESEEQALKKLSNQINLCEYLYELIDSQLMEDAPLH
TNQGNLIREGVDPELDDLKKIAFSGKDYLLQLQKREMEKTGITSLKVAYNKVFGYYLEVT
NSHKDKVPQEWIRKQTLVNAERYITEELKEYEEKILGAEDKMVVIEQRIFQSLLQNAMDF
VSPIQQNAKIIAQVDCLLSFAEIARANDYVKPQISETTALDIKLGRHPVIEQQLPHGEEY
IPNDVFLDNESQQIMIITGPNMAGKSALLRQTALIVLMAQMGCYVPAKSAEIGLVDKVFT
RVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIGRGTSTYDGVSIAWSIVEFL
HNHPKSKAKTLFATHYHELNQLAHDFPRIKNYNVSVKEIDGEIIFLRKLKKGGSEHSFGI
HVAHLAGMPNPVVLRANEIMHHLEKDKIRDKANRKMHEVPKNNYQLNMFEADPVLSEIKD
LLDKLDINSMSPVEALLKLNELKSKLN
Download sequence
Identical sequences E4TKX5
WP_013454421.1.33346 gi|313676390|ref|YP_004054386.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]