SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|51246754|ref|YP_066638.1| from Desulfotalea psychrophila LSv54

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|51246754|ref|YP_066638.1|
Domain Number 1 Region: 59-204
Classification Level Classification E-value
Superfamily Penicillin binding protein dimerisation domain 1.57e-27
Family Penicillin binding protein dimerisation domain 0.0029
Further Details:      
 
Domain Number 2 Region: 171-398
Classification Level Classification E-value
Superfamily beta-lactamase/transpeptidase-like 0.000000000000326
Family beta-Lactamase/D-ala carboxypeptidase 0.017
Further Details:      
 
Domain Number 3 Region: 541-594
Classification Level Classification E-value
Superfamily Penicillin-binding protein 2x (pbp-2x), c-terminal domain 0.00000327
Family Penicillin-binding protein 2x (pbp-2x), c-terminal domain 0.0091
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|51246754|ref|YP_066638.1|
Sequence length 610
Comment sporulation specific penicillin-binding protein [Desulfotalea psychrophila LSv54]
Sequence
MRKSRLRVRKKRGWKKWLFFIMLSILAVAGRECDVRYHLVDRILAAKNQLDGAEGKAFLT
RGNVYDRYNTPLAVNAQRVALFCRTRELENPDTVSRILAKILCIDQETLRARLDSEALRV
WLAEGLSKGQVAEIEAADLQGVYFDRKTVRYYPETSLATHLIGVVEDDVSVSGVECYFDK
LLRGDLEKDYLAISLSGVQDLVLTVDVKSQRLLEKMLQGIAAEGNIERVAAYVVDAKTGG
VLAGAQWPTCNPNEFRKCPQDQRANFFLQPIPVPQSFQNLFADASLLYGSAHEKYFLPWS
VIKTQENIVKENLVWRWLGFGDGWKPDFAASNKVMNGQRDYFTRAETYKNFATPPRNISP
IHLLMGLSSLASGRESIRPHVVEKIVDQQSQESVFFSHSIDFPLDARLTFRLGSKEVKKF
VFSRGGGRRVSSLLLSEAQPVFFEEGRGLVQQELVFALQPSLKRNFAMLLVVERNSAVTK
GRKKSLAGAVDKVLRRIASLQQVFDSLPVVAPLLPEQKFLPFQEGVKEGLVGRTARKERK
AMMPDLMGLSMRKSLQILQDYDCQPLVEGTGWVSSQYPPKGASMEAIKTCRISLQNPDSM
RRKRYAKKRL
Download sequence
Identical sequences Q6AJ49
177439.DP2902 gi|51246754|ref|YP_066638.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]