SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for FBpp0228827 from Drosophila virilis 1.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  FBpp0228827
Domain Number 1 Region: 62-108
Classification Level Classification E-value
Superfamily LysM domain 0.0000000445
Family LysM domain 0.0077
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: FBpp0228827   Gene: FBgn0201623   Transcript: FBtr0230335
Sequence length 343
Comment type=protein; loc=scaffold_12822:join(903084..903131,913210..913407,915207..915730,915795..916056); ID=FBpp0228827; name=Dvir\GJ14410-PA; parent=FBgn0201623,FBtr0230335; dbxref=FlyBase:FBpp0228827,FlyBase_Annotation_IDs:GJ14410-PA,GB_protein:EDW58401,REFSEQ:XP_002058433,FlyMine:FBpp0228827; MD5=1e9b540c12209f7b2b38e92636ce1b36; length=343; release=r1.2; species=Dvir;
Sequence
MDYIVKAYKDWKLHSQFQEIVPDMDDTEFMFNEKQSIRDSSRTLKKYGSTCCNNLRNNEI
LIRHTVEKTDTLQGISLKYGATTEQIRRANRLFASDSLFLRQFLLVPVEKTSPYYLQANG
ADQLADVLASPPTTPDANVQRETLNNANNLSYNSGSGGSSNSCNTNISSSSSSTRSGQLH
GTPRPYSIAGELLVQASDEDPALMHNHSACSSKQSKSLDSVAAMTPEEENRKCMNDFLNK
IDNTISESRKYVERSKDLVNSQSDAEICISPTTDVFSQRRNQQLNNSYKNNNNNNNRPPH
HQRHSSTGSGNSDTAQLLNTTQTRRVQNSLKRLEKQQDDFFEL
Download sequence
Identical sequences B4MBD0
XP_002058433.1.90633 FBpp0228827 7244.FBpp0228827

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]