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Domain assignment for gi|386038036|ref|YP_005960912.1| from Paenibacillus polymyxa M1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|386038036|ref|YP_005960912.1|
Domain Number 1 Region: 3-99
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 4.91e-18
Family Sigma2 domain of RNA polymerase sigma factors 0.0029
Further Details:      
 
Domain Number 2 Region: 122-178
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 3.36e-16
Family Sigma4 domain 0.024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|386038036|ref|YP_005960912.1|
Sequence length 191
Comment RNA polymerase sigma factor rpoD [Paenibacillus polymyxa M1]
Sequence
MQSESMYHVLTKMIEGDQKAFHTLYDATYKDVYRTVSFLMDHPQDREDIMNEIYMQMWTS
LPNYDPSRPFHFWLHGLVIRQVQRFRVKSWRRFRIFERIRVFSREEHHWDQPTLRTDGTD
PEISRAMHKLTDRQRTVIILRFYHDYTLEEIATLLDIPLGTVKSRYHAGLQSLRKQLGNL
PLERMDKNNAY
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Identical sequences gi|386038036|ref|YP_005960912.1|NC_017543 gi|386038036|ref|YP_005960912.1| WP_014600100.1.91857

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