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Domain assignment for gi|386038070|ref|YP_005960946.1| from Paenibacillus polymyxa M1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|386038070|ref|YP_005960946.1|
Domain Number 1 Region: 8-99
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 1.43e-24
Family Sigma2 domain of RNA polymerase sigma factors 0.0017
Further Details:      
 
Domain Number 2 Region: 119-186
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.000000000012
Family Sigma4 domain 0.052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|386038070|ref|YP_005960946.1|
Sequence length 191
Comment RNA polymerase sigma-H factor Sigma-30 [Paenibacillus polymyxa M1]
Sequence
MNPSISVENLKKLLTEDEQAFTQFYKEYHAMLYYHALKYMKNHEDAEDIVQEAFTRIYLN
IQKFNFSCKISTWMKGIVKNLCIDRFREKSRKSSTSLDVPIGEDNSNLVDTIIDEGKLPE
QLVIEKEEHISIINIVEEMPLSYRNVFVLRFFSDYSMKEISNNLSMELNTVKTNIFRSKK
FLKGRLLQFLI
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Identical sequences gi|386038070|ref|YP_005960946.1|NC_017543 gi|386038070|ref|YP_005960946.1| WP_014600134.1.13814 WP_014600134.1.91857

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