SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000017867 from Cavia porcellus 69_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000017867
Domain Number 1 Region: 1532-1644
Classification Level Classification E-value
Superfamily C-type lectin-like 1.18e-44
Family Noncollagenous (NC1) domain of collagen IV 0.0000039
Further Details:      
 
Domain Number 2 Region: 1420-1529
Classification Level Classification E-value
Superfamily C-type lectin-like 8.24e-43
Family Noncollagenous (NC1) domain of collagen IV 0.00000374
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000017867   Gene: ENSCPOG00000024822   Transcript: ENSCPOT00000027331
Sequence length 1645
Comment pep:known scaffold:cavPor3:scaffold_13:32982090:33046716:-1 gene:ENSCPOG00000024822 transcript:ENSCPOT00000027331 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
CSDKGQCVCSGTKGEKGEKGFPGPPGSPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGI
RGITGLPGFSGPPGLPGLPGHPGPYGLLGLPGCNGSKGEQGFPGLPGTPGYPGLMGSAGL
KGQKGAPAQEEDRELNGKGDMGLPGTPGFKGPLGPPGFPGPAGPPGPPGQLGFPGARGPT
GPKGHMGDNVVGQKGEQGVKGLAGPPGLPGTLSQLKQSKDLKGQKGDKGAMGKPGPPGAP
GPPGESYGAEKGHPGETGAQGKPGKDGAPGFPGTEGPKGSRGFPGLRGEDGIKGWKGDIG
LPGFRGPVSITRDNTNVIFDQEKGDEGIPGPPGPKGARGLQGPSGPPGVPGSRGPSRPGL
RGVPGTPGLKGSKGERGTPGMDSVGPPGAPGSPGSPGFSGSPGPPGPPGDIIFHSGPPGD
RGLPGPLGPLGIPGVDGPTGEPGLPCVQCPYVPGSPGLPGLRGLDGIKGIPGGQGTVGVK
GSPGSPGSPGVPGLPGFPGAQGAPGLKGRKGETPQPQGPVGAPGDPGLPGPSGRKGLDGI
PGTPGEKGLPGPRGKPALSGEKGDRGPLGDPGLPGPPGPAGPAGPPGYGLQGEPGPKGTQ
GVPGALGLPGKAGPKGESSISTPILGPPGPPGPPGHAGPQGPPDKQGIPGSMGECDSGLP
GPKGEPGISGIGFPGPPGLKGDQGFPGMKGSPGCPGKNGEDCKFPWASFPFRKGEPGLAR
PGEPGMPGLPGERGDSGENGEIGLPGLPGLRGIPGKQGLDGPRGDAGQPGLPGVKGPPGI
CTEGPNGAPGLPGLNGLKGQPGRRGDTGPKGDPGIPGLDRSGLPGEPGPPGMPGQRGEIG
PPGQKGFPGTPGLLGPPVSTGERGVVGMMGFPGTMGLPGPPGHPGMQGRKGNLGIPGIKG
NRGPPGAKGEQGDKGNPGPSQIALLKGDKGEPGLKGKEDVSSILGFTGNPGEKGNRGLPG
LPGLKGLKGPRGDLGSPGNPGEPGPRGMPGSMGNMGIPGSKGRKGPLGLPGLPGRPGLPG
IHGLQGDKGEPGYLKDTRPGPPGQKGDPGMPGDMGKKGERGPPGPPGQPGPAGPEGVPGR
PGSPGQPGKPGPAGDMGLKGIKGCPGPPGIKGPPGFPGLPGSPGPMGGRGDQGHDGIPGP
PGEKGETGLLGALPGPRGNPGAPGAKGERGPPGWPGLPGRKGTMGDVGPPGPMGVTGLPG
PPGPPGVVILGQKGNRGPPGLRGNPGDPGPPGPPGRHAEGIKGDKGFRGLPGPEGPPGMV
GDAGPPGLPGAPGTPGSPGLRGDPGFLGFPGMKGGQKGDPGFPGSTGPPGPIGPIGPPGA
RGDPGTLTIISLPGSPGPPGSRGPPGMQGEPGPLGPPGKPGPCGPRGKPGDDGKPGAPGP
TGAKGNKGSKGEQGPPGLDGLPGLKGRPGDIGTPAVGTTRGFVFTRHSQTTVAPPCPAGT
QPLYSGFSLLFVQGNERAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASRNDYSYWLS
TPTLMPMDMAPVTGRALEPYISRCTVCEGPAMPIAIHSQTTAIPPCPHGWISLWKGFSFI
MFTSAGSEGAGQALASPGSCLEEFRANPFIECHGRGTCNYYSNSYSFWLASLHPERMFRK
PIPSTVKAGELEKIISRCQVCMKKR
Download sequence
Identical sequences ENSCPOP00000017867 ENSCPOP00000017867 10141.ENSCPOP00000017867

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]