SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSTOP00000001027 from Ictidomys tridecemlineatus 76_2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSTOP00000001027
Domain Number 1 Region: 16-77
Classification Level Classification E-value
Superfamily DNA-binding domain 0.0000752
Family Methyl-CpG-binding domain, MBD 0.03
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSTOP00000001027   Gene: ENSSTOG00000001143   Transcript: ENSSTOT00000001149
Sequence length 1008
Comment pep:known_by_projection scaffold:spetri2:JH393456.1:1672721:1678220:1 gene:ENSSTOG00000001143 transcript:ENSSTOT00000001149 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTC
KCGLECPLNVPKVFNFDPLAPVTLGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETT
CSHSSPGEGASPQMFHTVSPGPPSTRPSCRVPSITPLNGGPGSLPQEQPSVPQAFPSLAG
PGGLFPPPRLPDPVPSGGSSSPCFLPRGNAPSPAPPPPPAISLNAPSYNWGTTVRSSLVP
SDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLLGPSGPPGPATQPPVSSATMH
LPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPTPSTLQGRRPRAQAPSASHS
SPRPSQRRPRRPPTVLRLLEGGSPQNPRRSRPRAPAPVPPPFPIPEPSQPILPSVLSLLG
LPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPA
PPAASKAPIVPSSVLQSPSEGLGMGAGPACPLPPLSGGEAFPFPSPEQGLALSGAGFPGM
LGALPLPLNLGQPPPSPLLSHSLFGMLAGGGGQPPPESLLPPPGGPGPPLAPGEPEGPSL
LVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSSEGAGGPSGEPFSGLG
DLPPLLFPPLSAPPTLIALNSALLAASLDPPSGTPPQPCVLSAPQPGPPTSSVTMATTDP
GASSLGKAPSNSGRPPQLLSPLLSASLLAGDLSSLTSSPGTLPSLLQPPGSLLSGQLGLQ
LLPGGGAPPPLSEASSPLACLLQSLQQIPPEQPEAPCLPPESPTSALEPEPARPPLSALA
PPHGSSDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPSRGRKPGSRREPSRLALKWGT
RGSFNGQMERSPRRTHHWQHNGELAEGGAEPKDPPLPGPHSEDLKVPLGIVRKSRRGRRR
KYNPTRNSNSSRQDITLEPSPTTRAAVPLPPRARPGRPAKNKRRKLAP
Download sequence
Identical sequences ENSSTOP00000001027 ENSSTOP00000001027

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]