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Domain assignment for jgi|Selmo1|404072|fgenesh2_pg.C_scaffold_2000060 from Selaginella moellendorffii

Domain architecture


Domain assignment details

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Strong hits

Sequence:  jgi|Selmo1|404072|fgenesh2_pg.C_scaffold_2000060
Domain Number 1 Region: 249-330
Classification Level Classification E-value
Superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region 0.0000000000562
Family Mechanosensitive channel protein MscS (YggB), transmembrane region 0.0075
Further Details:      
 
Domain Number 2 Region: 345-387
Classification Level Classification E-value
Superfamily Sm-like ribonucleoproteins 0.00000948
Family Mechanosensitive channel protein MscS (YggB), middle domain 0.0082
Further Details:      
 
Weak hits

Sequence:  jgi|Selmo1|404072|fgenesh2_pg.C_scaffold_2000060
Domain Number - Region: 408-480
Classification Level Classification E-value
Superfamily Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.00392
Family Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.032
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Selmo1|404072|fgenesh2_pg.C_scaffold_2000060
Sequence length 512
Sequence
MASVASSLEWHGLSARMRVAAPSRDLGGGGWRRFGSKSARIVTRECVAMPRNFGCPCSSS
SKLPPSRFVGDELTLKRHLRSKTLASRSSRDKDNENRPSFPIAKPFESVAEFSDNFLDRV
SSYIFRRLRTLFSPYFPKNFDIFSWLPVKIHSRLHSSEYLAIIFVREALIFGFFYVVFIK
VDSFCRWLNKLYIRNTKPEQQEVQSEDYEDSSFTAVRGPIKLTVLLWASTRFVNVLTPLK
VGHYVIGKVRAIGLVVAVIWFLLRWKRIMVDHLASKSRIDAPRVVAIDKVASLFLYFLAA
SSIAEVCGFALSSLLAVGGISGLAVGLAAKEIATAGNVPNICYTQAGSFSGEVQDIGFLQ
TKLLGFDKVPVLVPNQAFINQVIINYSRAKDKLLEATFQVRNQDIFLIEKITNRVVQYLR
WHKEVDKGSQPPMCYLKSMGSLGLDIGLLCIIRAPGGPSFFKAQQEILIQVAHIITEEGA
CLGTSGPFMPVVPEQTPPPEGEQPRPPETKIS
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Identical sequences D8QU72
jgi|Selmo1|404072|fgenesh2_pg.C_scaffold_2000060 XP_002962353.1.77236

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