SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000005380 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000005380
Domain Number 1 Region: 87-233
Classification Level Classification E-value
Superfamily C-type lectin-like 9.45e-41
Family C-type lectin domain 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000005380   Gene: ENSCPOG00000005961   Transcript: ENSCPOT00000006024
Sequence length 237
Comment pep:novel scaffold:cavPor3:scaffold_28:2888427:2900152:1 gene:ENSCPOG00000005961 transcript:ENSCPOT00000006024 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MTPKKIRAEVRFRNESKFSGLYSGSAEDPKEKVISHKSNPGLSKLLVASLLILFLLKTIL
SSVPSIILFQKYSRHLEEKTNVNGLVHTELECVKSNSTTQEKVWSCCPKNWKSFSSHCYF
ISTHSKPWNESKESCSSMEAHLLVINTEEEQDFIIQNLKKDIDYYIGLSDPEGQRDWQWV
DQTPYNESVAFWQEGEPNDENEHCVELRHFHYRRWGWNDISCHLGKGTVCEMMEIYL
Download sequence
Identical sequences 10141.ENSCPOP00000005380 ENSCPOP00000005380 ENSCPOP00000005380

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]