SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|397652751|ref|YP_006493332.1| from Pyrococcus furiosus COM1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|397652751|ref|YP_006493332.1|
Domain Number 1 Region: 79-219
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00000000000000971
Family Retroviral integrase, catalytic domain 0.018
Further Details:      
 
Weak hits

Sequence:  gi|397652751|ref|YP_006493332.1|
Domain Number - Region: 21-63
Classification Level Classification E-value
Superfamily Homeodomain-like 0.00777
Family Cgl2762-like 0.083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|397652751|ref|YP_006493332.1|
Sequence length 233
Comment transposase [Pyrococcus furiosus COM1]
Sequence
MKSETIIYWVVSALKPFRRNKIPPEKKIRGVELYLRGLSYRQTARILKISHVTVWEAVQK
LAEAVYKPKILAVKKQRNFIAVDETVIKINGKKRYLWAAIDVESKEVLAVWITTVRNWWV
ARDFILVVLKSCEGQPVFLVDRASWYKSAFKSLRLGYLHVTFGPRNSVERWFRTLKERTK
RFWNNFRGKDWRRVHRFVFLFAFWYNFVRIHSSFGDPPGDVTEWLQEVMPQLS
Download sequence
Identical sequences E7FHI3 I6V1U5 O59630
Pfu-415421-001 186497.PF0408 gi|18976780|ref|NP_578137.1| gi|397650893|ref|YP_006491474.1| gi|397650903|ref|YP_006491484.1| gi|397650929|ref|YP_006491510.1| gi|397651068|ref|YP_006491649.1| gi|397651321|ref|YP_006491902.1| gi|397651450|ref|YP_006492031.1| gi|397651725|ref|YP_006492306.1| gi|397651754|ref|YP_006492335.1| gi|397651858|ref|YP_006492439.1| gi|397652097|ref|YP_006492678.1| gi|397652292|ref|YP_006492873.1| gi|397652600|ref|YP_006493181.1| gi|397652616|ref|YP_006493197.1| gi|397652751|ref|YP_006493332.1| WP_011011522.1.13913 WP_011011522.1.59273 WP_011011522.1.75726

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]