SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1 from Arabidopsis lyrata

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1
Domain Number 1 Region: 113-218
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 4.58e-29
Family B3 DNA binding domain 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1
Sequence length 697
Sequence
MEQEKSLDPQLWHACAGSMVQIPSVNSTVFYFAQGHTEHAHAPPDFHAPRVPPLILCRVV
SVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDVNVNGNGNEKPASFAKT
LTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVIAKDIHGETWKFRHIYRGTPRRH
LLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSTGLGSDNPYPGFSGF
LRDDETSTTSKLMMMKRNGNDGNAAAGGRVRVEAVAEAVARAACGQAFEVVYYPRASTPE
FCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLL
QVAWDEPDLLQNVKRVSPWLVELVSNMPAIHLSPFSPRKKIRIPQPFEFPFDGTKFPIFS
PGFANNGGGESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLNLSSYSSNKLQSP
AMFLSGFNPRHHYDNIVSRQARDTENSNNISCSLTIGNPAMVQDKKKSGGSVKTHQFLLF
GQPILTEQQVMNRKRSLEEEAEAQEEKSSAARGLTWNYGFQGLETGHCKVFMESEDVGRT
LDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGAIKRIGDEPFSDFMKSTKRLT
IKMDIGGDNVRKTWITGIRTGENGIDATKTGPLSIFA
Download sequence
Identical sequences D7LHN6
59689.fgenesh2_kg.4__731__AT2G28350.1 XP_002880932.1.15461 jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]