SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for jgi|Araly1|901047|scaffold_400548.1 from Arabidopsis lyrata

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Araly1|901047|scaffold_400548.1
Domain Number 1 Region: 339-440
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 2.35e-22
Family B3 DNA binding domain 0.0084
Further Details:      
 
Domain Number 2 Region: 194-295
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.02e-21
Family B3 DNA binding domain 0.0063
Further Details:      
 
Domain Number 3 Region: 490-590
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 7.65e-20
Family B3 DNA binding domain 0.0099
Further Details:      
 
Domain Number 4 Region: 67-165
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 2.35e-19
Family B3 DNA binding domain 0.0038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Araly1|901047|scaffold_400548.1
Sequence length 595
Sequence
MAPKKKTPTMVWRNRGNPEANPRKCNMAKPAKDKNKSLLDCSPLLEELPQSPDCKLKDLG
ILRMAKQHFFKPLLPGFHSHLTIPVAFFLKNIEGRHEQKTAELRSDASKITWEVKIDGQR
LTDGWKEFALSHDLRIGDIVVFRQERDMCFHVTMLGPSCCEIQYGSCLDNKNNLGKIQRK
KNPRRETESSSLDPSCFVANVTVSSLRDDRLNLPRSFVRENGLDTRCGEIVLMNEKGRTW
TLDLKGNKSYRTTYIKQGWRSFCHANGLRAGSIFTFKLIQKGKTPVLRLSPKEPEEQANE
VSLSPELESDEDTNLGKIQRRKKRKKNPSRDIESSSLDPSCFVAHITRSSLRYDILYLPK
RFMRENGLDTRCGEMILMNEKGRSWALDLKRKNSCGTTYIKRGWRSFCRANGLRAGSFYT
FKLIQNERTLVLRLVPKEPEEEEEKANVESLSTEPSDEESSQDEKSSQECSKTMEKKSIL
IQKASSSASQSRFVTVTLTLYNVSLSRLTLPIPFTKVNGIQNAKKMSFLDKHGVKWSTSL
RFEQDRQRMRLVGGWKEFCDANGVKIGESIMLELVLEADKSFVLKFCSKVMQEIK
Download sequence
Identical sequences D7LIW0
XP_002878782.1.15461 59689.scaffold_400548.1 jgi|Araly1|901047|scaffold_400548.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]