SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|390945793|ref|YP_006409553.1| from Alistipes finegoldii DSM 17242

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|390945793|ref|YP_006409553.1|
Domain Number 1 Region: 115-395
Classification Level Classification E-value
Superfamily DNA breaking-rejoining enzymes 1.57e-37
Family Lambda integrase-like, catalytic core 0.0053
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|390945793|ref|YP_006409553.1|
Sequence length 406
Comment site-specific recombinase XerD [Alistipes finegoldii DSM 17242]
Sequence
MNYSKDGVTVAAMFDTAHPKKSGKCPVKIRVTYNRVRNYYPTGKDLSPEEWEILPTTKVR
ALVAIRKDIESSYQIVRAAVEDLAGAGGFSLDALNNRLKGAASDTVNAMFRGKIEELKKA
GRVGSMLVYDNVLKGLERFSGSRIRFEAVTVSWLGKYADFLRKEGKTQTTIAIHLRHLRA
ILNEAKRLGTIKDTQYPFGKGRYEIQAGEGRKLALTLEQIGQIANYEDGTEATAKYRDYW
LFLYLCNGINVADFVKLRYRDIVNGEICFVRQKTERTTKTRKEIRVVVTERMQAIIDRWG
NPPRHDNFIFSVLDGTEDAMRRKMKTLYITRAINKRMKEVGEKLGIGNISTYTARHSFAT
VLKRAGANIAYISESLGHQDLKTTENYLASFEREERVKNAEILTKF
Download sequence
Identical sequences I3YIQ0
WP_014774632.1.56960 gi|390945793|ref|YP_006409553.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]