SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|390945862|ref|YP_006409622.1| from Alistipes finegoldii DSM 17242

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|390945862|ref|YP_006409622.1|
Domain Number 1 Region: 113-393
Classification Level Classification E-value
Superfamily DNA breaking-rejoining enzymes 9.71e-47
Family Lambda integrase-like, catalytic core 0.0025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|390945862|ref|YP_006409622.1|
Sequence length 411
Comment site-specific recombinase XerD [Alistipes finegoldii DSM 17242]
Sequence
MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQFSCKLTVDPKLWDTKGGRVTGRST
AALETNRMLDKMRVRINKHYQEIMERDNFVTAEKVKNAFLGLEHRYHTLLQVFRQHNEDY
AKQVEAGMKAKGTFNKYKIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTDKHC
CTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKDEIRLLMEGKLKN
AKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRMLDIA
KRIIDKYRGLCGDGRIFPVPHYNTCLAGIRTVAKRCGITKHITWHQSRHTAATTVFLSNG
VPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLNQIEEFAGCTI
Download sequence
Identical sequences A0A076JBV7 D1K2F7 I3YIW9 R6ZMB2
gi|390945862|ref|YP_006409622.1| WP_008653387.1.35714 WP_008653387.1.56960 WP_008653387.1.69202

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]