SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for Medtr4g124900.2 from Medicago truncatula

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Medtr4g124900.2
Domain Number 1 Region: 116-255
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 4.97e-44
Family B3 DNA binding domain 0.0042
Further Details:      
 
Domain Number 2 Region: 974-1048
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.0000000128
Family PB1 domain 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Medtr4g124900.2
Sequence length 1097
Comment | auxin response factor 2 | HC | chr4:51795315-51802487 | 20130731
Sequence
MKAPNNGYMPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ
TDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGLKQNR
QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRH
IYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVIS
SDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMF
ETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTP
FYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSLVQWM
SMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPALSAPNLQFNKPNLPNQ
INQLQQSPTSWPQQQQQQQQPLQQQQQQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQN
LTLLQQQITHQLQKQPQSSQHAIMNNGVVASNQITNQFQQPQPLAYAQLQQQQQLLQGSI
PLQQSIQSASKNAFPLTSLPHDSQFHQQIDQQASLSQRQQQQTQSQQSSLQALQQSQPQR
VQPNLQATQMSQQNTSEQQLQLQFLQKLQQQQQQQQLLSTSNPLLQSQLLQQQNTNQQNQ
QLSQLPISQHHNQQFGNNAFSTEKLLNSNNLSSSSLMQSQQLSVNQTRNTQKPLTITRVP
STLTDGEAPSCSTSPSTNNCRITQPNLLKRNQQVPTTIGGILAVEPTSNLIHDLQSTTTD
QLEASSGTSYCLDPGNVQQNLPLSNFCMEGDVQSNPRINLPFDSNLDGLMSDTMLSRGFD
SQKDLQNLLSNYDAAPRDIETELSTADISSQSFGLPDMSFKPGCSNDVGINDTSGVLNNG
LRANQNQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKL
VYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGTDSG
NAWRGQYDDNSAASFNR
Download sequence
Identical sequences A0A072URY8
XP_013458391.1.50012 Medtr4g124900.2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]