SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001154525.1.80155 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001154525.1.80155
Domain Number 1 Region: 46-109,153-275
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 9.42e-52
Family Ypt/Rab-GAP domain of gyp1p 0.0021
Further Details:      
 
Domain Number 2 Region: 253-416
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 7.85e-31
Family Ypt/Rab-GAP domain of gyp1p 0.0043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001154525.1.80155
Sequence length 425
Comment Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]; AA=GCF_000001735.3; RF=reference genome; TAX=3702; STAX=3702; NAME=Arabidopsis thaliana; ecotype=Columbia; AL=Chromosome; RT=Major
Sequence
MFCCGFMWKSGGEDLQGFYPVRPECQPDVPRTRFKSRAGKTLSARRWHAAFTEDGHLDME
KVLRRIQRGGIHPSIKGAVWEFLLGCYDPDSTFEERNILRNRRREQYGAWKEECKKMVPV
IGSGKYVTMAVVQENGNPIDESSVENQGWIVKNTVTDERVLQWMLSLHQIGLDVARTDRY
LCFYENDRNQSKLWDVLAIYTWLNLDIGYVQGMNDICSPMIILFDDEGDAFWCFERAMRR
LRENFRATATSMGVQTQLGVLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFS
FLDALYLWELMWAMEYNPTMFATYEELENRNNAASDPKLLKRYGKFERKYINSGQNEQHR
NTLAVFVVASVLQTKNKRLLKEAKGLDDVVQILGDIAGNLDAKKACKEALKIHEKFLKKA
NSNKQ
Download sequence
Identical sequences F4IVD6
AT2G20440.1 AT2G20440.1 AT2G20440.2 NP_001154525.1.80155 NP_179634.2.80155 3702.AT2G20440.1-P

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]