SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001250022.1.50509 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001250022.1.50509
Domain Number 1 Region: 197-284
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 7.85e-16
Family Hairpin loop containing domain 0.037
Further Details:      
 
Domain Number 2 Region: 293-380
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 8.24e-16
Family Hairpin loop containing domain 0.018
Further Details:      
 
Domain Number 3 Region: 109-190
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.000000000000706
Family Pan module (APPLE domain) 0.056
Further Details:      
 
Domain Number 4 Region: 417-475
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.00000000589
Family Hairpin loop containing domain 0.028
Further Details:      
 
Domain Number 5 Region: 492-560
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.000000549
Family Pan module (APPLE domain) 0.055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001250022.1.50509
Sequence length 1052
Comment NOmpA Homolog (Drosophila nompA: no mechanoreceptor potential A) [Caenorhabditis elegans]; AA=GCF_000002985.6; RF=reference genome; TAX=6239; STAX=6239; NAME=Caenorhabditis elegans; strain=Bristol N2; AL=Complete Genome; RT=Major
Sequence
MKVFAVLALVVASVLADTLPSVTLCPPETQTIFVLQHNTTVGARIRTIPTSNLAECSDHC
SASLDCQGVEFKDGSCAVFRAGSEKATAGSQLLTKTCVKSDRVCQSPFQFDLFEQRILVG
FAREVVPAANIQICMAACLNAFDTFGFECESAMFYPVDQECILNTEDRLDRPSLFVEESD
DTVIYMDNNCAGSQCYPPYITQYIAVEGKQLKNELDRIINVDLDSCQALCTQRLSISSND
FNCKSFMYNNKTRTCILADERSKPLGRADLIATEGFTYFEKKCFASPNTCRNVPSFKRVP
QMILVGFAAFVMENVPSVTMCLDQCTNPPPETGDGFVCKSVMYYYNEQECILNSETRESK
PELFIPEGEEFLVDYFDITCHLKQEKCPTGQHLKAIRTINAALPEGESELHVLKASAAKG
IKECVAKCFGLAPEKCRSFNYDKKTKSCDLLYLDGHNTLQPQVRQGVDLYDLHCLAVEND
CSANKDDALFSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTCAGANYNRRLGDCTLFD
AIDDDAEINEHTDFYKNLCVTKEIDTGASAAANVPETKHRVSGTVVEGKDSKSQLLATKK
VKKPTIKNTEHRRAPESTVPIGPPVEVKAEAIQTICNYEGIKVQINNGEPFSGVIFVKNK
FDTCRVEVANSNAATLVLGLPKDFGMRPISLDNIDDNETGKNKTKKGEETPLKDEIEEFR
QKRQAAEFRDCGLVDLLNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCDYSSMLGGRVQ
AGYNMTVTGPEANLIQPRGKIELGNPVLMQLLNGDGTEQPLVQAKLGDILELRWEIMAMD
DELDFFVKNCHAEPGVAGGKAGAGEKLRLIDGGCPTPAVAQKLIPGAIEIKSSAVKTTKM
QAFRFDSSASIRVTCEVEICKGDCEPVECALTGGVKKSFGRKKREVSNNIEEFETNRYLI
PRRSHATTSIVIIDPLQQVCTKVNEPVAMSRASTLDLLREDAHEVQMIEEGSICLNSVTV
FAIFGTLAVLILGQTVVIAHYAVRRFSSEKTA
Download sequence
Identical sequences H8W3Y1
C34G6.6c NP_001250022.1.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]