SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_058060.2.92730 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_058060.2.92730
Domain Number 1 Region: 132-379
Classification Level Classification E-value
Superfamily vWA-like 1.29e-84
Family Integrin A (or I) domain 0.00000000066
Further Details:      
 
Domain Number 2 Region: 375-464
Classification Level Classification E-value
Superfamily Integrin domains 2.51e-33
Family Integrin domains 0.00000404
Further Details:      
 
Domain Number 3 Region: 631-715
Classification Level Classification E-value
Superfamily Integrin beta tail domain 7.59e-23
Family Integrin beta tail domain 0.00000694
Further Details:      
 
Domain Number 4 Region: 27-82
Classification Level Classification E-value
Superfamily Plexin repeat 0.000000000000199
Family Plexin repeat 0.0000462
Further Details:      
 
Domain Number 5 Region: 589-630
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000276
Family Integrin beta EGF-like domains 0.00035
Further Details:      
 
Domain Number 6 Region: 547-585
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000279
Family Integrin beta EGF-like domains 0.0018
Further Details:      
 
Weak hits

Sequence:  NP_058060.2.92730
Domain Number - Region: 516-547
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0276
Family Integrin beta EGF-like domains 0.016
Further Details:      
 
Domain Number - Region: 475-499
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0642
Family Integrin beta EGF-like domains 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_058060.2.92730
Sequence length 787
Comment integrin beta-3 precursor [Mus musculus]; AA=GCF_000001635.25; RF=reference genome; TAX=10090; STAX=10090; NAME=Mus musculus; AL=Chromosome; RT=Patch
Sequence
MRAQWPGQLWAALLALGALAGVVVGESNICTTRGVNSCQQCLAVSPVCAWCSDETLSQGS
PRCNLKENLLKDNCAPESIEFPVSEAQILEARPLSSKGSGSSAQITQVSPQRIALRLRPD
DSKIFSLQVRQVEDYPVDIYYLMDLSFSMKDDLSSIQTLGTKLASQMRKLTSNLRIGFGA
FVDKPVSPYMYISPPQAIKNPCYNMKNACLPMFGYKHVLTLTDQVSRFNEEVKKQSVSRN
RDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVLPNDGHCHI
GTDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVSLYQNYSELIPGTTVGVLSD
DSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCVGLKIGDTV
SFSIEAKVRGCPQEKEQSFTIKPVGFKDSLTVQVTFDCDCACQAFAQPSSPRCNNGNGTF
ECGVCRCDQGWLGSMCECSEEDYRPSQQEECSPKEGQPICSQRGECLCGQCVCHSSDFGK
ITGKYCECDDFSCVRYKGEMCSGHGQCNCGDCVCDSDWTGYYCNCTTRTDTCMSTNGLLC
SGRGNCECGSCVCVQPGSYGDTCEKCPTCPDACSFKKECVECKKFNRGTLHEENTCSRYC
RDDIEQVKELTDTGKNAVNCTYKNEDDCVVRFQYYEDTSGRAVLYVVEEPECPKGPDILV
VLLSVMGAILLIGLATLLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFT
NITYRGT
Download sequence
Identical sequences O54890
ENSMUSP00000021028 ENSMUSP00000021028 10090.ENSMUSP00000021028 ENSMUSP00000021028 NP_058060.2.92730

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]