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Domain assignment for NP_201197.1.80155 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_201197.1.80155
Domain Number 1 Region: 11-602
Classification Level Classification E-value
Superfamily Prokaryotic type I DNA topoisomerase 5.76e-156
Family Prokaryotic type I DNA topoisomerase 0.000022
Further Details:      
 
Domain Number 2 Region: 893-922
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000183
Family Retrovirus zinc finger-like domains 0.006
Further Details:      
 
Domain Number 3 Region: 752-785
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000356
Family Retrovirus zinc finger-like domains 0.0065
Further Details:      
 
Weak hits

Sequence:  NP_201197.1.80155
Domain Number - Region: 641-673
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 0.0289
Family PhnA zinc-binding domain 0.072
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_201197.1.80155
Sequence length 926
Comment topoisomerase 3alpha [Arabidopsis thaliana]; AA=GCF_000001735.3; RF=reference genome; TAX=3702; STAX=3702; NAME=Arabidopsis thaliana; ecotype=Columbia; AL=Chromosome; RT=Major
Sequence
MSRRGGGPVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRML
MTSVIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL
WLDCDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVD
ARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQA
HEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERF
KYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMV
EEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVY
ELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVY
EKGQQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKD
ANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMK
ACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNF
MVGCMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLG
CVGGCDDILKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHASTNC
PSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEANRGRQFFSCPTQGCSFFA
WEDSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRRGSGTSFVSATGEPVSGI
RCFSCGDPSHFANACPNRNNSNGNYF
Download sequence
Identical sequences Q9LVP1
AT5G63920.1 NP_201197.1.80155 AT5G63920.1 3702.AT5G63920.1-P AR3021

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