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Domain assignment for NP_775561.1.92730 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_775561.1.92730
Domain Number 1 Region: 308-395
Classification Level Classification E-value
Superfamily Immunoglobulin 0.00000000000000122
Family I set domains 0.019
Further Details:      
 
Domain Number 2 Region: 150-200
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000785
Family TSP-1 type 1 repeat 0.0012
Further Details:      
 
Weak hits

Sequence:  NP_775561.1.92730
Domain Number - Region: 223-287
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.00051
Family Rhamnogalacturonase B, RhgB, middle domain 0.016
Further Details:      
 
Domain Number - Region: 492-550
Classification Level Classification E-value
Superfamily Carboxypeptidase regulatory domain-like 0.00131
Family Carboxypeptidase regulatory domain 0.051
Further Details:      
 
Domain Number - Region: 51-174
Classification Level Classification E-value
Superfamily Vitelline membrane outer protein-I (VMO-I) 0.0248
Family Vitelline membrane outer protein-I (VMO-I) 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_775561.1.92730
Sequence length 1250
Comment cartilage intermediate layer protein 1 precursor [Mus musculus]; AA=GCF_000001635.25; RF=reference genome; TAX=10090; STAX=10090; NAME=Mus musculus; AL=Chromosome; RT=Patch
Sequence
MAAIKTWVFSFLVLEVTTVLGRQTMLAQSVRRVQPVKRTPKTLAKPADSQESPGEWTTWF
NIDHPGGQGDYERLDAIRFYYGERVCARPLRLEARTTDWMPAGSTGQVVHGSPREGFWCL
NREQRPGQNCSNYTVRFLCPPGSLRGDAEHIWSSWSPWSKCSAACGHTGVQTRTRTCLAQ
TVSLCSEATEEGQLCMSQACTACDLTCPMGQVNADCDACMCQDFMLHGAISLPGGGPAPG
AAVYLLAKAPKMLTRTDSSGRFRVPGLCPDGKTILKITKTKFAPIMITMPKTSLKSATIN
AEFVRAETPYIVMNPEMKARRAGQSVSLCCKATGKPSPDKYFWYHNNTLLDPSLYKHESK
LVLRNLQQDQAGEYFCKAQSDAGAVKSKVTQLTVIAHDETPCNPTPESYLIRLPHDCFQN
ASNSFYYDVGRCPIKTCAGQQDNGIRCRDAVENCCGISRTEEREIQCSGYTLPTKVAVEC
SCQRCAETRSIVRGRVTAADNGEPMRFGHVYMGNNRVSMTGYKGTFTLHIPQDTERLVLT
FVDRLQKFVNTTKVLPFNKKGSAVFHEIKMLRQKEPITLEAMETNIIPLGEVIGEDPVAE
LEIPSKSFYRQNGEPFTGKVKASVTFLDPRNISTATAAQSDLNFINDEGDTFPLRTYGMF
SVDFRDEATSESLNAGKVKVHLDSTQVKMPEHVPAMKLWSLNPDTGLWEEEGDFKFESQR
RNKREERTFLVGNMEIRERRLFNLDVPESRRCFIKVRTYRSERFLPSEQIQGVVVSVINL
EPRTGFSSNPRAWGRFDSVITGPNGACLPAFCDDQSPDAYSVYVLASLSGEELEAVESSP
KFNPNAIGVPQPYLNKLKYRRTDHEDPRVKKTAFQISMAKPRPNSAEESNGPIYAFENLR
ACEEAPPSAAHFRFYQIEGDRYDYNTVPFNEDDPMSWTEDYLAWWPKPMEFRACYIKVKI
VGPLEVNVRSRNMGGTHRQTVGKLYGIRDVKSTRDRDQPNVSSACLEFKCSGMLYDQDRV
DRTLVKVIPQGSCHRASVNSMLHEYLVNHLPLAVNNDTSEYTMLAPLDPLGHNYGIYTVT
DQDPRTAKEIALGRCFDGTSDGSSRIMKSNVGVALTFNCAERQVGRQSAFQYLQSTPARS
PATGTVQGRVPAMRQQRASRGGLRRRGSMGPSEIFWCCSTTSEQLSLVVLSPFCPSHVTA
VVRLMHRLSLVNLNISGLVQFVSLCLYLLSLPHDADCHRAPTMTKQRFSS
Download sequence
Identical sequences A0A0R4J0F8
ENSMUSP00000036631 ENSMUSP00000036631 10090.ENSMUSP00000036631 NP_775561.1.92730 NYSGRC-IgSF-Q66K08 ENSMUSP00000036631

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