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Domain assignment for WP_011530706.1.71355 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_011530706.1.71355
Domain Number 1 Region: 314-409
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.29e-26
Family Cold shock DNA-binding domain-like 0.0015
Further Details:      
 
Domain Number 2 Region: 247-333
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.59e-26
Family Cold shock DNA-binding domain-like 0.0012
Further Details:      
 
Domain Number 3 Region: 404-491
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.12e-23
Family Cold shock DNA-binding domain-like 0.002
Further Details:      
 
Domain Number 4 Region: 54-168
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.19e-19
Family Cold shock DNA-binding domain-like 0.012
Further Details:      
 
Domain Number 5 Region: 160-240
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000000131
Family Cold shock DNA-binding domain-like 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_011530706.1.71355
Sequence length 587
Comment 30S ribosomal protein S1 [Deinococcus geothermalis]; AA=GCF_000196275.1; RF=representative genome; TAX=319795; STAX=68909; NAME=Deinococcus geothermalis DSM 11300; strain=DSM 11300; AL=Complete Genome; RT=Major
Sequence
MEDQTQTPATEGGTTQPMPGTEQTSSGQTSSGQTPSQPQAAPASTDEREYPAMTMEDVLA
SEAQEPQTVSRGDIVDGTVVFIGQEGIAVDVGAKVEGIIPLNQIGDEPVTLEQAQQMYKP
GDQIEAYVVRVDLANNQIVLSKKRADQDKGWRVLERMQEQDEAFEVEVLEKVRGGLVAQV
EGIRAFLPASQVDTRRVNDLDPYVGKPLMVKLIELNRKRNRVIISHRAILEAQKAKAREQ
TIGKLVPGAQFEGEVVEITDFGVFVNLGGIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQ
VIDVDEGRERINLSMKSLTQDPWEGAVEKYHIGQRVRGKVTNLTNFGAFVELEPGLEGLV
HVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISLGIRQTTDDPWSALPDRYPPG
TPVKGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNIDPV
EQRASLSRRRALGGGGPVRDYVSQGGGSRSDRYSGGGGQGGRSGGRGGRSGGADYNYNAK
DAQQGGKISTKLGDVYADLFAQFGLGGDNKKDSAQGEGQGNTEKQGE
Download sequence
Identical sequences Q1IY12
WP_011530706.1.71355 319795.Dgeo_1577 gi|94985677|ref|YP_605041.1|

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