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Domain assignment for XP_002866571.1.15461 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_002866571.1.15461
Domain Number 1 Region: 246-341
Classification Level Classification E-value
Superfamily SWIB/MDM2 domain 2.29e-23
Family SWIB/MDM2 domain 0.00016
Further Details:      
 
Domain Number 2 Region: 399-517
Classification Level Classification E-value
Superfamily Plus3-like 0.00000000000000327
Family Plus3 0.0068
Further Details:      
 
Domain Number 3 Region: 14-75
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.000000115
Family PHD domain 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_002866571.1.15461
Sequence length 568
Comment zinc finger family protein [Arabidopsis lyrata subsp. lyrata]; AA=GCF_000004255.2; RF=representative genome; TAX=81972; STAX=59689; NAME=Arabidopsis lyrata subsp. lyrata; AL=Scaffold; RT=Minor
Sequence
MNNVVEIVEEEEEDEKECEDWCFICKDGGNLILCDFKDCPKVYHESCVEKGSTASKNGDS
YICMWHSCYLCKKTPKLCCLCCSHAVCEGCVTHAEFTQLKENKGLCNQCQEYVFALEEIQ
EYDAAGDKLDLTDRNTFECLFLEYWEIVKKQEDLTFGEVRNVCASKPRKKGVKSKYKDDP
KFSLGDVHTSKSRKKGDKLKYKDDPKFPLGDVHTSKSGKKGVKLKIKDDPKFSLSDHGVE
DAVDYKTVGKKKRMEFIRWGSKPLIDFLTSIGEDTRDAMSQHSVESVIRRYIREKNLLDR
EKKKKVHCDEKLYSIFRKKSVNQKRIYTLLNTHLKENLDQVEYFTPLEPGFSQKKEKRFS
EKNDEVLMPCKKQKTESSDEEICEKEVQPEMQATGFATINADNIKLVYLRKSLVVELLKQ
NERFVDKVVGSFVKVKNNPRDLMAYQILQVTGIKTADDQSEGVLLHVAGMASGISISKLD
DSDISEEEIKDLKQKVMNGLLRQPTVVEMEQKAKALHVDITKHRELLEKTSEQERLLKET
PRIIEDSIEIKQEPSVSGLSHEAVIEID
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Identical sequences D7MPR9
59689.fgenesh1_pm.C_scaffold_8001936 jgi|Araly1|332593|fgenesh1_pm.C_scaffold_8001936 XP_002866571.1.15461

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