SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_003369562.1.5133 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  XP_003369562.1.5133
Domain Number - Region: 162-204
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.00129
Family Pan module (APPLE domain) 0.032
Further Details:      
 
Domain Number - Region: 276-317
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.0745
Family Hairpin loop containing domain 0.058
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_003369562.1.5133
Sequence length 526
Comment putative PAN domain protein [Trichinella spiralis]; AA=GCF_000181795.1; RF=representative genome; TAX=6334; STAX=6334; NAME=Trichinella spiralis; strain=ISS 195; AL=Scaffold; RT=Major
Sequence
MLRQWSTLAIICFINCYLVNCSWMSLYIPKLDATCVLTAKAIRHEVVLHIKQAYCSMESC
VAACYQLSPSCNLIKYSPFAKVCNLYYENATRHILQSNDRIGQSMHLLLHSCHKDISNIP
AGIIVQSVYQRNDSATIHTPSTHKNCEFFGLPFVENFYAQRIHLIVTSSLKRCIAFCEAP
TYTSCNSVLFSAQEGTCLLLSRDRNLPLLGGLIPTLQTSAQFFIILRCYNDFDFPYAYSI
PRFEEIAPTVYSIFNLTVSLYRVHFYATKAGIRIGLWETVDEIHCIMICLDKLLADYCDG
YFFSYGEKTCLTFSIRKKYALPNSPLNRRIIQFSDEICTVQHSVSNVIPWMNLVQLYANI
SFLNDCISICRFIRNFGLCQGIAYSKESEVCLIAVLGNYDDEVFLNEGYHFLTLNDCSKD
RENERVDNDQPELHLLPFLDEICQVELYKPLFLSGWSVIIEVVNATTLLECLTNCAAVTH
AIKCGAIYFLHKSCFLLERMTHAQNYFTREKASVFAELLFCEPNIK
Download sequence
Identical sequences E5SWN4
EFV50800 XP_003369562.1.5133

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]