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Domain assignment for XP_003752832.1.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_003752832.1.4139
Domain Number 1 Region: 124-232
Classification Level Classification E-value
Superfamily Elongation factor TFIIS domain 2 5.36e-35
Family Elongation factor TFIIS domain 2 0.0046
Further Details:      
 
Domain Number 2 Region: 2-91
Classification Level Classification E-value
Superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2.22e-27
Family Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.0000658
Further Details:      
 
Domain Number 3 Region: 249-299
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 1.96e-17
Family Transcriptional factor domain 0.00021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_003752832.1.4139
Sequence length 301
Comment PREDICTED: transcription elongation factor A protein 1 [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
EVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDET
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEI
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
C
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Identical sequences Q4KLL0
ENSRNOP00000010893 10116.ENSRNOP00000010893 NP_001020906.1.100692 NP_001020906.1.4139 XP_003752832.1.4139 XP_006237878.1.100692 XP_006251782.1.100692 ENSRNOP00000010893

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