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  Home > Genomes > NCBI 2017_08 genome > XP_005909657.1.15283

Domain assignment for XP_005909657.1.15283 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  XP_005909657.1.15283
Domain Number 1 Region: 1450-1625
Classification Level Classification E-value
Superfamily Fibronectin type III 3.91e-29
Family Fibronectin type III 0.0000485
Further Details:      
 
Domain Number 2 Region: 1816-1983
Classification Level Classification E-value
Superfamily Fibronectin type III 1.61e-27
Family Fibronectin type III 0.00000981
Further Details:      
 
Domain Number 3 Region: 909-1078
Classification Level Classification E-value
Superfamily Fibronectin type III 7.66e-26
Family Fibronectin type III 0.00062
Further Details:      
 
Domain Number 4 Region: 1270-1439
Classification Level Classification E-value
Superfamily Fibronectin type III 8.78e-23
Family Fibronectin type III 0.0000187
Further Details:      
 
Domain Number 5 Region: 727-892
Classification Level Classification E-value
Superfamily Fibronectin type III 2.77e-22
Family Fibronectin type III 0.00075
Further Details:      
 
Domain Number 6 Region: 409-464
Classification Level Classification E-value
Superfamily Kringle-like 9.14e-21
Family Fibronectin type II module 0.0000458
Further Details:      
 
Domain Number 7 Region: 349-404
Classification Level Classification E-value
Superfamily Kringle-like 9.14e-21
Family Fibronectin type II module 0.0000652
Further Details:      
 
Domain Number 8 Region: 1635-1806
Classification Level Classification E-value
Superfamily Fibronectin type III 9.53e-21
Family Fibronectin type III 0.001
Further Details:      
 
Domain Number 9 Region: 1174-1262
Classification Level Classification E-value
Superfamily Fibronectin type III 4.97e-17
Family Fibronectin type III 0.0000028
Further Details:      
 
Domain Number 10 Region: 558-604
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000000955
Family Fibronectin type I module 0.0018
Further Details:      
 
Domain Number 11 Region: 2247-2290
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000000157
Family Fibronectin type I module 0.0016
Further Details:      
 
Domain Number 12 Region: 516-560
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000000288
Family Fibronectin type I module 0.0045
Further Details:      
 
Domain Number 13 Region: 619-701
Classification Level Classification E-value
Superfamily Fibronectin type III 0.000000000000041
Family Fibronectin type III 0.00000621
Further Details:      
 
Domain Number 14 Region: 231-275
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000114
Family Fibronectin type I module 0.0001
Further Details:      
 
Domain Number 15 Region: 468-509
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000157
Family Fibronectin type I module 0.002
Further Details:      
 
Domain Number 16 Region: 94-139
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000275
Family Fibronectin type I module 0.00012
Further Details:      
 
Domain Number 17 Region: 185-230
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000824
Family Fibronectin type I module 0.00016
Further Details:      
 
Domain Number 18 Region: 50-91
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000017
Family Fibronectin type I module 0.00019
Further Details:      
 
Domain Number 19 Region: 142-182
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000034
Family Fibronectin type I module 0.00018
Further Details:      
 
Domain Number 20 Region: 2290-2331
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000144
Family Fibronectin type I module 0.0026
Further Details:      
 
Domain Number 21 Region: 2207-2245
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000284
Family Fibronectin type I module 0.0025
Further Details:      
 
Domain Number 22 Region: 307-345
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000115
Family Fibronectin type I module 0.0003
Further Details:      
 
Domain Number 23 Region: 2119-2182
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000321
Family Fibronectin type III 0.0033
Further Details:      
 
Domain Number 24 Region: 1097-1181
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000934
Family Fibronectin type III 0.002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_005909657.1.15283
Sequence length 2384
Comment PREDICTED: fibronectin isoform X3 [Bos mutus]; AA=GCF_000298355.1; RF=representative genome; TAX=72004; STAX=72004; NAME=Bos mutus; AL=Scaffold; RT=Major
Sequence 
MLGGPGPGLLLLLAVLSLGTAVPSAGASKSRRQAQQIVQPQSPLTVSQSKPGCYDNGKHY
QINQQWERTYLGSALVCTCYGGSRGFNCESKPEPEETCFDKYTGNTYRVGDTYERPKDSM
IWDCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTC
KPIAEKCFDQAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTS
YRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSLQTTSAGSGSFTDVRTAIYQPQPH
PQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEP
CVLPFTYNGKTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGAL
CHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMAAHEEICTTNEGVMYR
IGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDGITYNVNDTFHKRHEEGH
MLNCTCFGQGRGRWKCDPVDQCQDSETRTFYQIGDSWEKYLQGVRYQCYCYGRGIGEWAC
QPLQTYPDTSGPVQVIITETPSQPNSHPIQWSAPESSHISKYILRWKPKNSPNRWKEATI
PGHLNSYTIKGLRPGVVYEGQLISVQHYGQREVTRFDFTTTSTSPAVTSNTVTGETTPLS
PVVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPD
LLPGRKYTVNVYEISEEGEQNLILSTSQTTAPDAPPDPTVDQVDDTSIVVRWSRPRAPIT
GYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYNITIYAVEENQESTPVFIQQETT
GVPRSDKVPPPRDLQFVEVTDVKITIMWTPPESPVTGYRVDVIPVNLPGEHGQGLPVSTN
TFAEVTGLSPGVTYHFKVFAVNQGRESKPLTAQQATKLDAPTNLQFINETDTTVIVTWTP
PRARIVGYRLTVGLTRGGQPKQYNVGPAASQYPLRNLQPGSEYAVSLVAVKGNQQSPRVT
GVFTTLQPLGSIPHYNTEVTETTIVITWTPAPRIGFKLGVRPSQGGEAPREVTSESGSIV
VSGLTPGVEYVYTISVLRDGQERDAPIVKKVVTPLSPPTNLHLEANPDTGVLTVSWERST
TPDITGYRITTTPTNGQQGYSLEEVVHADQSSCTFENLSPGLEYNVSVYTVKDDKESVPI
SDTIIPAVPPPTDLRFTNVGPDTMRVTWAPPSSIELTNLLVRYSPVKNEEDVAELSISPS
DNAVVLTNLLPGTEYLVSVSSVYEQHESIPLRGRQKTALDSPSGIDFSDITANSFTVHWI
APRATITGYRIRHHPEHMGGRPREDRVPPSRNSITLTNLNPGTEYVVSIVALNSKEESLP
LVGQQSTVSDVPRDLEVIAATPTSLLISWDAPAVTVRYYRITYGETGGSSPVQEFTVPGS
KSTATISGLKPGVDYTITVYAVTGRGDSPASSKPVSINYRTEIDKPSQMQVTDVQDNSIS
VRWLPSSSPVTGYRVTTAPKNGPGPSKTKTVGPDQTEMTIEGLQPTVEYVVSVYAQNQNG
ESQPLVQTAVTNIDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPA
PDGEEETAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAIPAPTNLKFTQVTPTSLT
AQWTAPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL
TSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTETITGFQVDAIPANGQTPIQR
TIRPDVRSYTITGLQPGTDYKIHLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSL
LVSWQPPRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIQVIALKNN
QKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPSTVQKTPFITNPGYDTGNGIQLPGT
SGQQPSLGQQMIFEEHGFRRTTPPTTATPVRHRPRPYPPNVNEEIQIGHVPRGDVDHHLY
PHVVGLNPNASTGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTSASATL
TGLTRGATYNIIVEAVKDQQRQKVREEVVTVGNSVDQGLSQPTDDSCYTVSHYAIGEEWE
RLSDSGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNG
KGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAEPGN
EGSTAHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADREDSRE
Download sequence
Identical sequences XP_005909657.1.15283

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.