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Domain assignment for XP_006300423.1.15642 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  XP_006300423.1.15642
Domain Number - Region: 299-330
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0023
Family Retrovirus zinc finger-like domains 0.0078
Further Details:      
 
Domain Number - Region: 103-181
Classification Level Classification E-value
Superfamily P40 nucleoprotein 0.0301
Family P40 nucleoprotein 0.018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_006300423.1.15642
Sequence length 454
Comment hypothetical protein CARUB_v10021967mg, partial [Capsella rubella]; AA=GCF_000375325.1; RF=representative genome; TAX=81985; STAX=81985; NAME=Capsella rubella; cultivar=Monte Gargano; AL=Scaffold; RT=Major
Sequence
MPPANKKGEGDDGHHTMTTTDWAEFRDALLTSKHNLQAYLLDAMRNLTDTLVHSLGDRHH
RRGGENFWAMDNPFAHEGAHRGELVNFLQQDNHAQDTRWKASFRVEIPDFHEEILEFKKV
PEDHKVALATTRFPGHAASWWQHTKATRSRTVKDYIHSWEKPKKKLRATFLKHNYDRTIY
NKLQNLKQGSRSVDEYVKEFYLLVTRNDIFDSPIQLVSRFIGVLRVQLQNAMSQFDPTSI
SEAHRRAASFELQFRSPSWSTPSAKTRPYNQSTTTTSTAIKELGTANEVTNKAAREEQPL
RRSTRPNALRCYSFGEAGHRQTTCPNQTQDGRDEDNVEGLHTTGDTGRLLVARRLCIAPP
SRTDSWLRHNIIRSSCIIQDRVCTFIIDLGSSRNTMAEYVEQNLNILAEPHPTPYSLGWM
QDGVDIRITHRALVAFTIGHHYKDRFYFDVAPID
Download sequence
Identical sequences R0GCJ0
XP_006300423.1.15642 Carubv10021967m|PACid:20907147

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