SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_009816479.1.37116 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_009816479.1.37116
Domain Number 1 Region: 340-489
Classification Level Classification E-value
Superfamily TRAF domain-like 2.49e-51
Family MATH domain 0.0000000828
Further Details:      
 
Domain Number 2 Region: 301-339
Classification Level Classification E-value
Superfamily Trimerization domain of TRAF 0.00000000000000968
Family Trimerization domain of TRAF 0.00058
Further Details:      
 
Domain Number 3 Region: 31-74
Classification Level Classification E-value
Superfamily RING/U-box 0.00000000184
Family RING finger domain, C3HC4 0.021
Further Details:      
 
Domain Number 4 Region: 181-234
Classification Level Classification E-value
Superfamily TRAF domain-like 0.000000327
Family SIAH, seven in absentia homolog 0.04
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_009816479.1.37116
Sequence length 491
Comment PREDICTED: LOW QUALITY PROTEIN: TNF receptor-associated factor 2-like [Gavia stellata]; AA=GCF_000690875.1; RF=representative genome; TAX=37040; STAX=37040; NAME=Gavia stellata; AL=Scaffold; RT=Major
Sequence
MAAANSTPPGSLDLNQPGFAKEILGTKLEVKYLCSDCKNILRRPFQAQCGHRYCSYCLKK
IISAGPQKCASCIQEGIYEEGISILETSSAFPDNAARREVESLPAVCINSGCTWKGTIKE
YESCHEGNCPFPLVECXGCKGVVXRECPERNLNCKYCKSLFSFPDTEAHDEVCPEFPLTC
EGCGKKIPREKFRDHVKTCGRSKVPCRFEVVGCAEVVENEKLPEHESKCLAEHLYMLLSF
VLSLKPGSGDLKPLPSELSGRCEALERKTVTFENIVCVLNREVDRVSLTAEAYSRQHRLD
QEKIETLSNKVRQLERSIGLKDLAMAEMEEKIRNMEASTYDGVFIWKITEFARKRQEAIT
GRSPAIFSPAFYTSKYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV
TLMLLDQNNREHIIDAFRPDVTSSSFQRPITEMNIASGCPLFCPVSVMEAKNSYVRDDAI
FIKAIVDLTGL
Download sequence
Identical sequences XP_009816479.1.37116

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]