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Domain assignment for XP_012685507.1.3086 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_012685507.1.3086
Domain Number 1 Region: 450-598
Classification Level Classification E-value
Superfamily TRAF domain-like 3.43e-50
Family MATH domain 0.000000157
Further Details:      
 
Domain Number 2 Region: 410-448
Classification Level Classification E-value
Superfamily Trimerization domain of TRAF 0.000000000000785
Family Trimerization domain of TRAF 0.00087
Further Details:      
 
Domain Number 3 Region: 26-74
Classification Level Classification E-value
Superfamily RING/U-box 0.00000000379
Family RING finger domain, C3HC4 0.029
Further Details:      
 
Domain Number 4 Region: 107-161
Classification Level Classification E-value
Superfamily TRAF domain-like 0.0000386
Family SIAH, seven in absentia homolog 0.0087
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_012685507.1.3086
Sequence length 600
Comment PREDICTED: TNF receptor-associated factor 2-like [Clupea harengus]; AA=GCF_000966335.1; RF=representative genome; TAX=7950; STAX=7950; NAME=Clupea harengus; AL=Scaffold; RT=Major
Sequence
MATQEPSPPSSMESNKPGFPKKILANKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVETLAAICVHEGCTWKGSIKE
YELSHEGKCEFMIIPCPSCKERLRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCDMLVEKEKIHEHERACA
HEHLNLLLHFIMGMKLSLEGMQPQSLELAGYKAHELHQSLRELEARVSQLNAMSAPIVGP
SVQGASSSSSSSSAGASGSAAAAAPPLPTPTLNTLNTLNTSFTPLPSSVGAALELQLHSE
KTKVAELGRRCQELEVKSGTFQDVVCVLNREVERFATTIEASNRQHRLDQDKIEALSNKV
RQLERTVGVKDLTVAELEGRLREMAATTFDGVFIWRISDFTKKRQDAIAGRAPAMFSPAF
YTSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGQSDALLKWPFNQKVTLMLLDQSNRE
HIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLEGKNTYIRDDTIFIKAIVDLTGL
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Identical sequences XP_012685507.1.3086

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