SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_019102325.1.75697 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_019102325.1.75697
Domain Number 1 Region: 448-576
Classification Level Classification E-value
Superfamily Plus3-like 6.15e-26
Family Plus3 0.0028
Further Details:      
 
Domain Number 2 Region: 320-398
Classification Level Classification E-value
Superfamily SWIB/MDM2 domain 1.37e-21
Family SWIB/MDM2 domain 0.00081
Further Details:      
 
Domain Number 3 Region: 720-776
Classification Level Classification E-value
Superfamily GYF domain 2.88e-16
Family GYF domain 0.00064
Further Details:      
 
Domain Number 4 Region: 109-166
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.000000288
Family PHD domain 0.0078
Further Details:      
 
Domain Number 5 Region: 1259-1283
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.00000772
Family CCCH zinc finger 0.0037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_019102325.1.75697
Sequence length 1284
Comment PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Camelina sativa]; AA=GCF_000633955.1; RF=representative genome; TAX=90675; STAX=90675; NAME=Camelina sativa; cultivar=DH55; AL=Chromosome; RT=Major
Sequence
MENQQKQLQRGVPELASLAGREESSVRGIDLMRVDQCDEIGAANQVSTLSVSASTVSGTV
AVPVSTEQEVKVIDEAAPVKRKRGRPPRSQANTPLHNRPPPPPPPPVRKDDKEEDVCFIC
FDGGDLVLCDRRNCPKAYHPACIKRDEAFFRTTAKWNCGWHICGTCQKASSYMCYTCTFS
VCKRCIKDADYVIVRGNMGLCGTCIKPVMLIENIAQGDNEAVKVDFDDKLSWEYLFKVYW
LCLKEDLSLTVDELTRANNPWKEVSNTAPIVESRNDPTNNRVLDVAVNGTKRRRTSDSPT
LPSKVDGKKPNNILKKAPGDTCWATKELLEFVSFMKNGDTSVLSQFDVQGLVLDYIKKKD
LRDPLQKSQVVCDPMLRKLFGKPRVGHFEMLKLLESHVLIQENQKYDKTTNGESTHTAPS
QIEDRRRKMRRKTDGRVQNENLDAHAAIDVHNINLIYLRRKYLESLLDDINKVHEKVVGT
ILRIKVSGSDQKLDIHRLVQVVGTSKATTSYQLGPKTTDVMLEILNLDKREVISIDQLSD
QNVTEDECKRLRQSIKNGLNKRLTVGDILKTAATLQAMRISESLEAETLKLNHLRDRASE
KGHRKELRECVEKLELLKSPEERQRRLQEVPEVHTDPSMDPSHASSEYAGLGTRNQDNHI
TAQSEGPLKKGAILNNMGNNAQKKYDAPILRSRNSVHSEKDDCSKVHNNSSNIQETGKDD
EESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWKAHENQDESVLLTDALAGRF
DKASTLPSSSSLPQEPKPSPHDSGMDVNCLQKNHTPVNTSATSSPYTVSAHFDDPKEKQV
VALVACSGEDGNSVCPQPQVSCPASMSVVTGHVVTPDVRETPGSDLFNVVRADGNHSTTN
TVEDGSNGGSVYINGSVHAPNLNQESHFPDFPSPTPKSSPEDLEAQAAETIQSLSSCVLV
KGPSGVTWSTTTTSTTDSATTTSSVVVTGGQLPQVTQQNAVVLAAPSVKPIDLVADHATT
TQTSDNTQVAQSSGWPAIVADPDECDESVSDLLAEVEAMEQNGLPSSPTSTFHCDDDDDL
TKGPEKDFFNPVARMSLAPETCRMDVSQASILENVSAGKSSMGTEEKVNTPFSHCGTAGP
ELLLFAPPAPAPASITHDLTLTTTALRLGSETTVEAGPVVERLLKSGSELSPRALSYHDS
ARGNTERSPRGSQQKRSSGHSRDRQWLNNGHNSHNNRQWPYSNSHGYAHGSGSYAAHPPK
GLKICKFYESGNCKKGASCSFWHP
Download sequence
Identical sequences XP_019102324.1.75697 XP_019102325.1.75697

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]