SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for NP_001006974.1.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001006974.1.4139
Domain Number 1 Region: 18-83
Classification Level Classification E-value
Superfamily Ribosomal L11/L12e N-terminal domain 2.22e-23
Family Ribosomal L11/L12e N-terminal domain 0.00041
Further Details:      
 
Domain Number 2 Region: 80-155
Classification Level Classification E-value
Superfamily Ribosomal protein L11, C-terminal domain 9.29e-18
Family Ribosomal protein L11, C-terminal domain 0.00075
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001006974.1.4139
Sequence length 203
Comment 39S ribosomal protein L11, mitochondrial [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MSKLSRVTRTLKKPEAGGVIRSIVRAGQAIPGPPLGPILGQRGVSINQFCKEFNEKTKDI
KEGIPLPTKIFIKPDRTFELKIGQPTISYFLKAAAGIEKGARQTGKEVAGLVSLKHVYEI
ARVKAKDEAFAMQDVPLSSIVRSIIGSARSLGIRVVKDLSVDELAAFQKERAVFLAAQKR
RIWQLRQKLPKSDPNLLHSEVRD
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Identical sequences Q5XIE3
NP_001006974.1.100692 NP_001006974.1.4139 ENSRNOP00000027091 10116.ENSRNOP00000027091 ENSRNOP00000027091

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