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Domain assignment for NP_001032869.2.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001032869.2.4139
Domain Number 1 Region: 122-365
Classification Level Classification E-value
Superfamily vWA-like 1.63e-84
Family Integrin A (or I) domain 0.000000352
Further Details:      
 
Domain Number 2 Region: 333-452
Classification Level Classification E-value
Superfamily Integrin domains 5.75e-21
Family Integrin domains 0.001
Further Details:      
 
Domain Number 3 Region: 621-697
Classification Level Classification E-value
Superfamily Integrin beta tail domain 5.23e-18
Family Integrin beta tail domain 0.0025
Further Details:      
 
Domain Number 4 Region: 22-81
Classification Level Classification E-value
Superfamily Plexin repeat 0.000000000000314
Family Plexin repeat 0.0024
Further Details:      
 
Domain Number 5 Region: 535-575
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000363
Family Integrin beta EGF-like domains 0.002
Further Details:      
 
Domain Number 6 Region: 579-619
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00001
Family Integrin beta EGF-like domains 0.0077
Further Details:      
 
Weak hits

Sequence:  NP_001032869.2.4139
Domain Number - Region: 457-484
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00248
Family Integrin beta EGF-like domains 0.033
Further Details:      
 
Domain Number - Region: 500-525
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0173
Family Integrin beta EGF-like domains 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001032869.2.4139
Sequence length 768
Comment integrin beta-2 precursor [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MLGPHTLLLILAGLLFLGSALSEECTKYKVSNCRDCIQSGPGCSWCQKLNFTGPGEPDSL
RCDTRAQLLLKGCPADDIMDPKSFADLHPQYQVQRSQLSPQKVTLNLRPGQAAAFNVTFR
RAKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFV
NTHPEKLRNPCPNKEKACQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAI
MQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNMYKRSNEFD
YPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAVGELSDDSSNVVQLIKKAY
YKLSSRVFLDHTTIPDTLKVTYDSFCNNRVSSIGKSRGDCDGVQINNPVTFQVKVTASEC
IQEQSFVIRALGFTDTVTVQVHPQCECQCRDQSRMRNLCGGKGVMECGICRCESGYIGKN
CECQTQGRSSQELEGNCRKDNSSIVCSGLGDCICGQCVCHTSDIPNKVIFGQYCECDNFN
CERYDGQVCGGLKRGSCSCGQCNCKEGFEGSACQCQRSTTGCLNARLVECSGRGRCQCNR
CICEKGYQPPLCEECPGCPLPCSTYVFCAECLKFDKGPFQKNCSVQCANVTLQTVPFKKK
PCKERDSEGCWITYTLQQKDGNAYNIHVDDDRECVKGPNVAAIIGGTVAGVVLIGVLLLV
IWKALTHLTDLNEYRRFEKEKLKSQWNNDNPLFKSATTTVMNPKFAES
Download sequence
Identical sequences B2RYB8
NP_001032869.2.100692 NP_001032869.2.4139 10116.ENSRNOP00000001639 ENSRNOP00000001639

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