SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for NP_001159772.1.4139 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  NP_001159772.1.4139
Domain Number 1 Region: 65-122
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 5.67e-17
Family Transcriptional factor domain 0.012
Further Details:      
Weak hits

Sequence:  NP_001159772.1.4139
Domain Number - Region: 12-41
Classification Level Classification E-value
Superfamily RING/U-box 0.00353
Family RING finger domain, C3HC4 0.038
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001159772.1.4139
Sequence length 123
Comment DNA-directed RNA polymerase I subunit RPA12 [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
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Identical sequences Q6MFY5
ENSRNOP00000001012 10116.ENSRNOP00000001012 ENSRNOP00000001012 NP_001159772.1.100692 NP_001159772.1.4139 NP_998732.1.100692 NP_998732.1.4139

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