SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for WP_002810338.1.20919 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_002810338.1.20919
Domain Number 1 Region: 150-212
Classification Level Classification E-value
Superfamily NfeD domain-like 0.000000000275
Family NfeD domain-like 0.0073
Further Details:      
 
Weak hits

Sequence:  WP_002810338.1.20919
Domain Number - Region: 38-135
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 0.0366
Family Multidrug efflux transporter AcrB transmembrane domain 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_002810338.1.20919
Sequence length 214
Comment nodulation protein NodD [Nitrosococcus oceani]; AA=GCF_000740745.1; RF=na; TAX=314279; STAX=1229; NAME=Nitrosococcus oceani C-27; strain=C-27; AL=Scaffold; RT=Major
Sequence
MVRHVRVIWNTAFIGAICGSLLWLRREDIPAHLDALVLGILVGTLYGGLYWRYLFHRITR
KERRFERNRILVHYLSLFELLLTAATWSLYLLIALTLLILAAVLLDIFSGYWWSILISSF
GMAAALSLGGSIVRYERLYGALYYQYDSRSWLGGEGLLYQEGRAIQPLTPKGKIIINGEL
WHAVSLNGDNIEAGKKVEVISREGLTLYVDSLPQ
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Identical sequences A0A0E2Z0X4 Q3J913
WP_002810338.1.20919 WP_002810338.1.77844 WP_002810338.1.91979 gi|77165688|ref|YP_344213.1| 323261.Noc_2223

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