SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for WP_011333882.1.2668 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  WP_011333882.1.2668
Domain Number 1 Region: 93-293
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 2.71e-30
Family Phosphate binding protein-like 0.00024
Further Details:      
Domain Number 2 Region: 7-87
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.0000000000000748
Family LysR-like transcriptional regulators 0.0013
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_011333882.1.2668
Sequence length 324
Comment LysR family transcriptional regulator [Pseudomonas fluorescens]; AA=GCF_000012445.1; RF=na; TAX=205922; STAX=294; NAME=Pseudomonas fluorescens Pf0-1; strain=Pf0-1; AL=Complete Genome; RT=Major
Download sequence
Identical sequences Q3KDF4
gi|77458685|ref|YP_348191.1| WP_011333882.1.2668 205922.Pfl01_2460

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]